Detailed information NTG0368527

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FIU11_RS05170
• Genome accession: NZ_CP040990
• Coordinates: 974540..975529 (+)
• Length: 329 a.a.
• NCBI ID: WP_004723838.1
• Uniprot ID: A0A0Q2V080
• Organism: Vibrio furnissii strain FDAARGOS_777
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 969540..980529

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIU11_RS05135 (FIU11_05135)	ftsB	969555..969839 (+)	285	WP_004723824.1	cell division protein FtsB	-
FIU11_RS05140 (FIU11_05140)	ispD	969836..970549 (+)	714	WP_004723825.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FIU11_RS05145 (FIU11_05145)	ispF	970599..971075 (+)	477	WP_004723827.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FIU11_RS05150 (FIU11_05150)	truD	971107..972153 (+)	1047	WP_004723830.1	tRNA pseudouridine(13) synthase TruD	-
FIU11_RS05155 (FIU11_05155)	surE	972146..972913 (+)	768	WP_004723832.1	5'/3'-nucleotidase SurE	-
FIU11_RS05160 (FIU11_05160)	-	972906..973532 (+)	627	WP_014205779.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FIU11_RS05165 (FIU11_05165)	nlpD	973532..974467 (+)	936	WP_004723836.1	murein hydrolase activator NlpD	-
FIU11_RS05170 (FIU11_05170)	rpoS	974540..975529 (+)	990	WP_004723838.1	RNA polymerase sigma factor RpoS	Regulator
FIU11_RS05175 (FIU11_05175)	mutS	975598..978159 (-)	2562	WP_004723840.1	DNA mismatch repair protein MutS	-
FIU11_RS05180 (FIU11_05180)	pncC	978244..978738 (+)	495	WP_004723843.1	nicotinamide-nucleotide amidase	-
FIU11_RS05185 (FIU11_05185)	recA	978905..979957 (+)	1053	WP_004723845.1	recombinase RecA	Machinery gene
FIU11_RS05190 (FIU11_05190)	recX	980052..980522 (+)	471	WP_004723847.1	recombination regulator RecX	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37741.44 Da
• Isoelectric Point: 4.4379

>NTDB_id=368527 FIU11_RS05170 WP_004723838.1 974540..975529(+) (rpoS) [Vibrio furnissii strain FDAARGOS_777]
MSISNTATKVEEFEFDSEAVNNAATDQELTTNDNDQSEEVREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNS
DPEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNM
ESLFNVEND

Nucleotide

• Length: 990 bp

>NTDB_id=368527 FIU11_RS05170 WP_004723838.1 974540..975529(+) (rpoS) [Vibrio furnissii strain FDAARGOS_777]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGAGTTCGATTCAGAAGCCGTGAATAACGCGGCGACCGACCA
AGAACTGACTACCAACGATAATGACCAATCTGAAGAGGTTCGTGAAGAGTTTGATGCTTCCACGAAAAGCCTGGATGCCA
CTCAGATGTATCTGAGCGAGATTGGTTTCTCACCCTTATTAACCGCCGAAGAAGAAGTGCTCTATGCTCGCCGCGCCTTG
CGTGGTGATGAGGCTGCGCGCAAACGCATGATCGAGAGCAACTTACGTCTGGTGGTCAAAATCTCTCGCCGTTATAGCAA
TCGGGGCTTGGCACTGCTTGACCTGATTGAAGAGGGCAACCTTGGCCTCATTCGTGCAGTAGAGAAATTCGACCCAGAAC
GCGGTTTCCGTTTTTCGACTTATGCTACCTGGTGGATTCGTCAGACCATTGAACGTGCCCTGATGAACCAGACTCGTACG
ATTCGTTTACCAATTCATGTGGTGAAAGAACTGAACATTTACTTGCGTACTGCGCGTGAGCTGTCTCAGAAACTCGACCA
CGAACCGACCGCAGAAGAAATTGCTGTGGAACTGGATAAGCCAGTGGATGATGTCAGCAAAATGCTCCGTCTGAACGAGC
GCATTAGCTCCGTCGATACGCCAATTGGCGGTGATGGTGACAAAGCATTGCTCGATATCATTCCTGATATCAACAATTCC
GACCCTGAAGTCTCCACACAGGATGACGATATTCGTGATTCGCTGGTGGCTTGGCTCGATGAGCTCAATCCGAAACAGAA
AGAAGTGCTGGCTCGCCGTTTTGGCTTGTTAGGGTATGAACCATCAACACTGGAAGAAGTGGGCCGCGAGATCAATTTGA
CCCGTGAACGTGTGCGTCAAATTCAGGTGGAAGGTTTGCGCCGTCTGAGAGAAATCCTGATGAAACAGGGTTTGAACATG
GAATCGCTGTTTAATGTGGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A0A0Q2V080

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	88.024	100	0.894