Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SSPS47_RS22460 Genome accession   NZ_CP048397
Coordinates   5002479..5003537 (+) Length   352 a.a.
NCBI ID   WP_164252621.1    Uniprot ID   -
Organism   Streptomyces sp. S4.7     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4997479..5008537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSPS47_RS22445 (SSPS47_22720) - 4998834..5000465 (+) 1632 WP_164252619.1 ABC transporter substrate-binding protein -
  SSPS47_RS22450 (SSPS47_22725) - 5000589..5001518 (+) 930 WP_164252620.1 ABC transporter permease -
  SSPS47_RS22455 (SSPS47_22730) - 5001550..5002467 (+) 918 WP_164254864.1 ABC transporter permease -
  SSPS47_RS22460 (SSPS47_22735) amiE 5002479..5003537 (+) 1059 WP_164252621.1 ABC transporter ATP-binding protein Regulator
  SSPS47_RS22465 (SSPS47_22740) - 5003530..5004678 (+) 1149 WP_164252622.1 dipeptide ABC transporter ATP-binding protein -
  SSPS47_RS22470 (SSPS47_22745) - 5004836..5006467 (+) 1632 WP_164252623.1 ABC transporter substrate-binding protein -
  SSPS47_RS22475 (SSPS47_22750) - 5006588..5007511 (+) 924 WP_147874019.1 ABC transporter permease -
  SSPS47_RS22480 (SSPS47_22755) - 5007504..5008484 (+) 981 WP_147874018.1 ABC transporter permease -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38278.19 Da        Isoelectric Point: 6.7671

>NTDB_id=368524 SSPS47_RS22460 WP_164252621.1 5002479..5003537(+) (amiE) [Streptomyces sp. S4.7]
MTIIDKTADVPSPRGSGASGTPLLEVRDLHVEFHTRDGVAKAVNGVNYSVSAGETLAVLGESGSGKSVTAQAIMGILDMP
PGSIPRGEILFRGEDMLKMGSEERRLIRGRKIAMIFQDALSSLNPVLSVGYQLGEMFRVHQGLSKKEAKAKSVELMDRVR
IPASKERVNDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVAD
VADKIAVMYAGRIVETAPVHELYKRPAHPYARGLLDSIPRLDQKGQELYAIKGLPPNLTRIPSGCAFNPRCPSAQDICRT
DIPALLPVTERDGGELPGRGSACHFWKETIHG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=368524 SSPS47_RS22460 WP_164252621.1 5002479..5003537(+) (amiE) [Streptomyces sp. S4.7]
ATGACCATCATCGACAAGACGGCGGACGTTCCTTCTCCCCGCGGTTCGGGTGCCAGTGGCACCCCGCTGCTCGAAGTCCG
TGACCTGCACGTGGAGTTCCACACCCGTGACGGTGTGGCCAAGGCGGTCAACGGAGTCAACTACAGCGTCAGCGCCGGTG
AGACCCTCGCCGTGCTCGGCGAGTCCGGCTCCGGCAAGTCCGTGACCGCGCAGGCGATCATGGGCATCCTGGACATGCCG
CCGGGGAGCATTCCCCGCGGGGAGATCCTCTTCCGCGGCGAGGACATGCTCAAGATGGGCAGCGAGGAGCGGCGGCTCAT
CCGCGGCCGGAAGATCGCGATGATCTTCCAGGACGCGCTGTCCTCGCTCAACCCGGTGCTCTCCGTCGGCTACCAGCTCG
GCGAGATGTTCCGCGTGCACCAGGGCCTCTCCAAGAAGGAGGCCAAGGCCAAGTCCGTCGAGCTGATGGACCGCGTGCGC
ATCCCGGCGTCGAAGGAGCGGGTCAACGACTACCCGCACCAGTTCTCCGGCGGTATGCGCCAGCGCATCATGATCGCGAT
GGCGCTCGCCCTGGAGCCCGATCTGATCATCGCGGACGAGCCGACCACCGCGCTGGACGTGACGGTCCAGGCGCAGGTCA
TGGACCTGCTGGCGGAGCTGCAGCGCGAGTACAACATGGGCCTGATCCTGATCACCCACGACCTCGGCGTGGTCGCCGAC
GTCGCGGACAAGATCGCGGTCATGTACGCGGGACGGATCGTGGAGACCGCCCCCGTGCACGAGCTGTACAAGCGCCCCGC
GCACCCGTACGCCCGCGGTCTGCTGGACTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCTCTACGCGATCAAGGGCC
TGCCGCCCAACCTCACGCGGATTCCGTCCGGTTGCGCCTTCAACCCGCGCTGCCCGTCGGCGCAGGACATCTGCCGTACG
GACATCCCGGCGCTGCTTCCCGTCACCGAGCGGGACGGCGGCGAGCTGCCGGGCCGCGGCAGCGCGTGCCACTTCTGGAA
GGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(254-318)

ABC transporter (ABC_tran)

(44-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

50.676

84.091

0.426
  amiE Streptococcus thermophilus LMG 18311

50.338

84.091

0.423
  amiE Streptococcus thermophilus LMD-9

50.338

84.091

0.423
  oppD Streptococcus mutans UA159

47.115

88.636

0.418

Multiple sequence alignment