Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SSPS47_RS09410 Genome accession   NZ_CP048397
Coordinates   2130674..2132608 (+) Length   644 a.a.
NCBI ID   WP_164250207.1    Uniprot ID   -
Organism   Streptomyces sp. S4.7     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2125674..2137608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSPS47_RS09395 (SSPS47_09550) - 2126923..2127219 (+) 297 WP_147872945.1 YtxH domain-containing protein -
  SSPS47_RS09400 (SSPS47_09555) - 2127308..2128759 (+) 1452 WP_147872946.1 FGGY family carbohydrate kinase -
  SSPS47_RS09405 (SSPS47_09560) rcrP 2128941..2130674 (+) 1734 WP_164254469.1 ABC transporter ATP-binding protein Regulator
  SSPS47_RS09410 (SSPS47_09565) rcrQ 2130674..2132608 (+) 1935 WP_164250207.1 ABC transporter ATP-binding protein Regulator
  SSPS47_RS09415 (SSPS47_09570) - 2132882..2134138 (-) 1257 WP_164250209.1 RNA polymerase sigma factor -
  SSPS47_RS09420 (SSPS47_09575) dnaG 2134348..2136270 (-) 1923 WP_147872949.1 DNA primase -

Sequence

Protein


Download         Length: 644 a.a.        Molecular weight: 69182.35 Da        Isoelectric Point: 5.2948

>NTDB_id=368501 SSPS47_RS09410 WP_164250207.1 2130674..2132608(+) (rcrQ) [Streptomyces sp. S4.7]
MSGPGGRMMAAGAGSPSQRSMDFKGSSKRLLRQLAREKVTLWWMVAAGVLSVAASVVGPKILGSATDLIFAGVVGRQTPG
GAGKEETVSRLREEGDSGLADLLSGVDFVPGQGIDFDAVGRVLLVALAVYVAAGLLMLVSTRLSIRVINLTIYRMREDVQ
AKLSRLPLSYFDRQQRGEVLSRATNDVDNISQTLQQTMGQLINSLLTIVGVLGMMLWISPLLALVALVTVPLSVLVATKV
GKRSQPHFVQQWKSTGTLNAHIEEMYTGHALVKVFGRQDESARAFKEQNEALYQAGFKAQLNSGVMQPLMFFISNLNYVL
VAVVGGLRVASGTLSIGDVQAFVQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDADEQEKDAPSAARAHELRGRVA
LDGVAFRYEPDKPLIDDLSLSVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTAGRISLDDIDIATMSREDLRSRIGMVLQ
DTWLFGGTIAENIAYGAAGEVTREEIEEAARAAHADRFIRTLPDGYETVIDDEGSGVSAGEKQLITIARAFLSDPVILVL
DEATSSVDTRTEVLIQKAMAQLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHGGLLAAQGAYARLYAAQFAQAV
AEVD

Nucleotide


Download         Length: 1935 bp        

>NTDB_id=368501 SSPS47_RS09410 WP_164250207.1 2130674..2132608(+) (rcrQ) [Streptomyces sp. S4.7]
ATGAGCGGTCCTGGCGGACGCATGATGGCGGCCGGCGCGGGTTCCCCGTCGCAGCGGTCGATGGATTTCAAGGGGTCGAG
CAAACGGCTGCTGCGGCAACTCGCGCGGGAGAAGGTCACCCTGTGGTGGATGGTCGCCGCGGGTGTGCTGAGCGTGGCCG
CCTCGGTGGTCGGCCCGAAGATACTCGGCTCGGCGACCGACCTGATCTTCGCGGGGGTCGTCGGCCGTCAGACGCCGGGG
GGCGCCGGCAAGGAGGAGACCGTCTCGCGGCTCCGGGAGGAGGGCGACAGCGGGCTCGCCGACCTGCTCTCCGGGGTGGA
CTTCGTACCGGGGCAGGGCATCGACTTCGACGCGGTCGGCCGGGTCCTGCTGGTGGCGCTGGCGGTGTACGTCGCGGCCG
GGCTGCTGATGCTGGTCTCGACGCGGCTGTCGATCCGGGTCATCAACCTCACCATCTACCGGATGCGCGAGGACGTACAG
GCCAAGCTGTCACGGCTGCCGCTGTCGTACTTCGACCGTCAGCAGCGCGGTGAGGTCCTGAGCCGGGCGACGAACGACGT
CGACAACATCTCCCAGACGCTCCAGCAGACGATGGGCCAGCTCATCAACTCCCTGCTGACGATCGTCGGTGTCCTCGGGA
TGATGCTGTGGATCTCGCCCCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGGTGCTGGTGGCGACGAAGGTC
GGCAAGCGCTCGCAGCCGCACTTCGTACAGCAGTGGAAGTCGACGGGCACGCTGAACGCCCATATCGAGGAGATGTACAC
CGGGCACGCCCTGGTGAAGGTCTTCGGGCGGCAGGACGAGTCGGCGCGGGCGTTCAAGGAGCAGAACGAGGCGCTGTACC
AGGCCGGTTTCAAGGCGCAGCTCAACAGCGGCGTGATGCAGCCGCTGATGTTCTTCATCTCCAACCTCAACTATGTGCTG
GTGGCGGTCGTCGGCGGGCTGCGCGTCGCGTCGGGGACGCTGTCGATCGGTGATGTACAGGCGTTCGTCCAGTACTCGCG
CCAGTTCTCGATGCCGCTGACGCAGGTGGCGTCGATGGCCAACCTCGTCCAGTCCGGGGTCGCGTCCGCCGAGCGGATCT
TCGAGCTGCTGGACGCGGACGAGCAGGAGAAGGACGCTCCCTCGGCCGCGCGTGCGCACGAGTTGCGGGGACGGGTGGCG
CTGGACGGCGTGGCGTTCCGCTACGAGCCGGACAAGCCCCTCATCGACGACCTGTCGCTGTCGGTGGAGCCGGGCCAGAC
GGTGGCCATCGTCGGCCCGACGGGCGCGGGGAAGACGACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGACGGCCG
GCCGGATCAGTCTGGACGACATCGACATCGCCACCATGTCGCGGGAGGACCTGCGGTCCCGGATAGGCATGGTCCTCCAG
GACACCTGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGCGCGGCGGGCGAGGTCACCCGGGAGGAGATCGA
GGAGGCGGCGCGGGCGGCCCACGCGGACCGTTTCATCCGCACGCTGCCCGACGGCTACGAGACCGTGATCGACGACGAGG
GGTCGGGCGTCAGCGCGGGCGAGAAGCAGCTCATCACGATCGCGCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTG
GACGAGGCGACCAGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCAACTGGCGCACGGGCGGAC
GAGCTTCGTGATCGCCCACCGGCTGTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGAACGGCTCGATAGTCG
AACAGGGCACGCACGGAGGGCTGCTCGCGGCGCAGGGCGCGTACGCCCGGCTGTACGCGGCGCAGTTCGCGCAAGCGGTG
GCCGAGGTGGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(47-353)

ABC transporter (ABC_tran)

(416-565)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.032

96.584

0.387