Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SSPS47_RS09405 Genome accession   NZ_CP048397
Coordinates   2128941..2130674 (+) Length   577 a.a.
NCBI ID   WP_164254469.1    Uniprot ID   -
Organism   Streptomyces sp. S4.7     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2123941..2135674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSPS47_RS09365 (SSPS47_09520) - 2124234..2124569 (-) 336 WP_164250201.1 hypothetical protein -
  SSPS47_RS09370 (SSPS47_09525) - 2124807..2125010 (+) 204 WP_164250203.1 hypothetical protein -
  SSPS47_RS09375 (SSPS47_09530) - 2125251..2125781 (-) 531 WP_164250205.1 hypothetical protein -
  SSPS47_RS09395 (SSPS47_09550) - 2126923..2127219 (+) 297 WP_147872945.1 YtxH domain-containing protein -
  SSPS47_RS09400 (SSPS47_09555) - 2127308..2128759 (+) 1452 WP_147872946.1 FGGY family carbohydrate kinase -
  SSPS47_RS09405 (SSPS47_09560) rcrP 2128941..2130674 (+) 1734 WP_164254469.1 ABC transporter ATP-binding protein Regulator
  SSPS47_RS09410 (SSPS47_09565) rcrQ 2130674..2132608 (+) 1935 WP_164250207.1 ABC transporter ATP-binding protein Regulator
  SSPS47_RS09415 (SSPS47_09570) - 2132882..2134138 (-) 1257 WP_164250209.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62662.89 Da        Isoelectric Point: 6.0367

>NTDB_id=368500 SSPS47_RS09405 WP_164254469.1 2128941..2130674(+) (rcrP) [Streptomyces sp. S4.7]
MLLRLLRTHLAPYKKAIGLLVVLQLLQTCASLYLPTLNADIIDNGVVTGDTGYIMEFGALMIAVSVLQVLGQIGAVYYGA
RTASALGRDVRAAIFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLVLMSFTLMVSAPIMCVGGIVMALGQDVPLSAV
LLAVVPVLGISVSLIVKRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDEYEKKRFEGANTALTETQLATGRLMAL
MFPVVMTVVNVSSVAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLDTRSSVVP
PEDPVLMLRRHGHLEVRGAEFRYPGAEEPVLRDVSLTARPGETTAVIGSTGSGKSTLLGLVPRLVDATAGEVLVDGESVR
RLDPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVTDLEGGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETAEATVVIVAQRVSTIRDADRIIVMDEGRVVGQGRHRELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=368500 SSPS47_RS09405 WP_164254469.1 2128941..2130674(+) (rcrP) [Streptomyces sp. S4.7]
GTGCTGCTACGACTACTCAGAACCCATCTCGCCCCCTACAAGAAAGCCATCGGTCTGCTGGTGGTGCTCCAGCTGCTGCA
GACCTGCGCCTCCCTCTATCTGCCCACCCTCAACGCCGACATCATCGACAACGGTGTCGTGACGGGTGACACGGGTTACA
TCATGGAGTTCGGCGCTCTCATGATCGCCGTGAGCGTCCTCCAGGTGCTCGGCCAGATAGGCGCCGTCTACTACGGCGCG
CGTACCGCCTCGGCCCTCGGCCGGGACGTGCGGGCCGCGATCTTCGACCGGGTGCAGAGCTTCTCCGCCCGTGAGGTCGG
CCAGTTCGGGGCGCCGTCGCTGATCACGCGCACCACCAACGACGTCCAGCAGGTGCAGATGCTGGTGCTGATGTCGTTCA
CGCTCATGGTGTCGGCCCCGATCATGTGTGTCGGCGGCATCGTGATGGCGCTCGGCCAGGACGTGCCGCTGTCCGCGGTG
CTGCTCGCCGTCGTGCCGGTCCTCGGCATCTCCGTGAGCCTGATCGTGAAGCGGATGCGCCCGCTGTTCCGCACCATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGTGAGCAGATCACCGGCAACCGCGTCATCCGGGCGTTCGTCCGCGACG
AGTACGAGAAGAAGCGGTTCGAGGGTGCCAACACCGCCCTCACCGAGACGCAGCTGGCGACCGGCCGGCTGATGGCGCTG
ATGTTCCCGGTCGTGATGACGGTCGTGAACGTGTCGTCCGTCGCCGTCGTCTGGTTCGGCGCGCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACCGCGTTCCTCGCGTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGTGCCGAGCGCATCGAGGAGGTGCTGGACACCAGGTCGAGCGTCGTACCG
CCCGAGGATCCGGTGCTGATGCTGCGCCGGCACGGTCATCTGGAGGTGCGGGGCGCGGAGTTCCGCTACCCGGGGGCCGA
GGAGCCGGTGCTTCGTGATGTGTCACTGACCGCCAGACCGGGCGAGACGACCGCCGTCATCGGCTCGACCGGCAGCGGCA
AGTCGACACTGCTGGGGCTGGTGCCCCGGCTGGTCGACGCGACGGCCGGCGAGGTGCTGGTGGACGGTGAGAGCGTACGC
CGTCTCGATCCGGCGCTGCTGGCCAAAACGGTCAGCCTGGTGCCGCAGAAGCCGTATCTGTTCTCGGGCACGGTGGCGAC
GAATCTGCGGTACGGGAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCACCGACCTGGAGGGCGGGCTGAACGCGCCCATCGCGCAGGGCGGGACGAACGTCTCCGGTGGGCAGCGCCAGCGGCTC
GCGATCGCGCGCACGCTGGTGCAGCGGCCGGAGATCTATCTGTTCGACGACTCGTTCTCCGCGCTGGACTACGCGACGGA
CGCGGCGCTGCGAGCCGCCCTGGCGCGCGAGACCGCGGAGGCGACGGTGGTGATAGTCGCCCAGCGGGTGTCGACCATCC
GCGATGCCGACCGGATCATCGTCATGGACGAGGGCCGGGTGGTCGGTCAGGGACGCCACCGCGAACTGATGGCCGGGAAC
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACCGAGGCGGAGGCGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.806

98.96

0.404