Detailed information    

insolico Bioinformatically predicted

Overview


Name   pepF   Type   Regulator
Locus tag   FIU07_RS00030 Genome accession   NZ_CP040988
Coordinates   4261..6066 (+) Length   601 a.a.
NCBI ID   WP_003724606.1    Uniprot ID   A0A3D7VFE2
Organism   Listeria monocytogenes strain FDAARGOS_778     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context


Location: 1..11066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU07_RS00010 (FIU07_00010) - 379..1347 (+) 969 WP_003722315.1 ABC transporter ATP-binding protein -
  FIU07_RS00015 (FIU07_00015) spxA 1667..2062 (+) 396 WP_003720569.1 transcriptional regulator SpxA -
  FIU07_RS00020 (FIU07_00020) mecA 2294..2947 (+) 654 WP_003724608.1 adaptor protein MecA -
  FIU07_RS00025 (FIU07_00025) - 3073..4188 (+) 1116 WP_072219607.1 competence protein CoiA -
  FIU07_RS00030 (FIU07_00030) pepF 4261..6066 (+) 1806 WP_003724606.1 oligoendopeptidase F Regulator
  FIU07_RS00035 (FIU07_00035) - 6365..6625 (+) 261 WP_003724605.1 DUF3116 family protein -
  FIU07_RS00040 (FIU07_00040) isdC 6836..7462 (+) 627 WP_003724604.1 heme uptake protein IsdC -
  FIU07_RS00045 (FIU07_00045) hbp2 7475..9184 (+) 1710 WP_003734378.1 hemin/hemoglobin-binding protein Hbp2 -
  FIU07_RS00050 (FIU07_00050) isdE 9271..10143 (+) 873 WP_003727849.1 heme ABC transporter substrate-binding protein IsdE -

Sequence


Protein


Download         Length: 601 a.a.        Molecular weight: 68550.63 Da        Isoelectric Point: 4.5488

>NTDB_id=368472 FIU07_RS00030 WP_003724606.1 4261..6066(+) (pepF) [Listeria monocytogenes strain FDAARGOS_778]
MSKTNALPLREEVPENLTWDLTTIYPNDEAWEQAFTDLQKITEESEQFKGRLSESSQTLYEALQFRDNAYDLISNLYVYA
HLKMDQDTANAKYQGLHSRAGSLVTKLMSALSYYDPEILAMDESVLKQFLNENKDLQLYAHLLEELNLSRPYILSEKEEA
LLANAGEVLGSSSNTFNTLNNADMKFPTIKDENGEDIEITHGRFGKLLESNDPRVRREAFLGVYSVYEGLKNTLASTLNG
QVKKSNFYASTRGYTSAREAALSGNHIPETVYDSLLKSVNANADLLHRYVKLRKELLGLEELHMYDLYTPLSDDVNLEFT
YEEAKELVLEALKPLGDEYQAILKEAFDSRWIDVMENKGKRSGAYSSGSYSTSPYILLNWQDNINNVYTLAHELGHSVHS
YYTRKNQPFVYGDYSIFLAEVASTTNENLLTDYLLKKYDDPKVRAYLLNHYLDGFKGTVFRQTQFAEFEHAIHQADQEGV
ALTADYLTETYFDINKKYYGEAMVYDAEIGYEWSRIPHFYMNYYVFQYATGFSAASALSAKILTEGQEAVTAYIDFLKAG
SSDYPIDVLKKAGVDMATPNPVDDALKVFEQRLDELEKLVK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=368472 FIU07_RS00030 WP_003724606.1 4261..6066(+) (pepF) [Listeria monocytogenes strain FDAARGOS_778]
TTGAGTAAAACAAATGCATTACCTTTAAGAGAAGAAGTACCAGAAAATCTAACTTGGGATTTAACTACGATTTATCCAAA
CGATGAAGCTTGGGAACAAGCATTTACAGATTTGCAAAAAATCACAGAAGAAAGCGAGCAATTTAAAGGGCGTTTATCGG
AAAGCAGCCAGACACTATATGAAGCACTTCAATTTCGAGATAATGCATATGATTTAATTAGTAACTTATATGTATATGCG
CATTTGAAAATGGACCAAGATACAGCTAATGCGAAATATCAAGGTTTACATAGTCGCGCAGGAAGCCTAGTTACAAAGCT
AATGTCTGCACTGTCTTATTATGATCCTGAAATTTTAGCTATGGACGAAAGCGTTTTAAAACAATTTTTAAATGAGAACA
AAGATTTACAATTATATGCGCATTTACTAGAAGAGTTAAATTTAAGCCGACCGTATATTTTAAGTGAGAAAGAGGAGGCT
TTACTAGCTAACGCAGGTGAAGTGCTTGGCAGTTCGTCTAATACTTTTAATACCTTGAATAATGCAGATATGAAGTTTCC
AACCATTAAAGATGAGAACGGGGAAGATATCGAAATTACTCATGGTCGTTTCGGGAAATTGTTGGAAAGTAATGATCCGC
GAGTTCGTCGTGAAGCGTTTCTTGGTGTGTATTCTGTTTATGAAGGCCTAAAAAACACCTTAGCCTCTACTTTGAATGGA
CAAGTGAAGAAGTCTAATTTTTATGCTTCCACTCGTGGCTACACGTCAGCTCGTGAAGCGGCTCTTTCTGGGAACCATAT
TCCTGAAACAGTATATGATTCCTTGTTAAAATCAGTAAATGCGAATGCAGATTTGCTTCATCGTTATGTGAAGTTACGTA
AAGAATTACTTGGCTTAGAGGAATTGCATATGTATGATCTTTATACGCCACTTTCTGATGATGTTAATTTGGAGTTTACT
TATGAAGAAGCGAAAGAACTTGTGCTTGAAGCGCTTAAACCGCTTGGTGATGAATATCAAGCAATTTTAAAAGAAGCATT
TGATAGTCGTTGGATTGATGTGATGGAAAATAAAGGAAAACGTAGTGGAGCCTATTCTTCTGGTTCGTATAGTACGAGTC
CTTATATTTTACTCAATTGGCAGGATAATATTAACAATGTTTACACACTTGCGCATGAATTAGGGCATAGTGTGCATAGT
TATTATACAAGAAAAAACCAACCATTTGTTTATGGTGATTATTCGATTTTCTTAGCGGAGGTTGCTTCGACAACAAATGA
AAATTTACTAACTGATTATCTTCTTAAGAAATATGATGATCCAAAAGTTCGTGCTTACTTGTTGAATCACTATTTGGATG
GATTCAAGGGTACTGTATTCCGTCAAACCCAATTTGCTGAATTTGAACATGCTATTCATCAAGCGGATCAAGAAGGAGTG
GCGCTGACTGCGGATTACTTGACCGAAACATATTTTGATATTAACAAGAAATATTACGGAGAAGCGATGGTTTATGATGC
TGAAATCGGTTATGAATGGTCTCGTATTCCGCATTTTTATATGAATTATTATGTGTTCCAATATGCGACTGGTTTTTCTG
CAGCATCTGCATTGAGTGCGAAGATTTTAACAGAAGGCCAAGAAGCGGTGACTGCCTATATTGATTTCTTGAAAGCGGGA
AGTTCGGATTATCCTATCGATGTGTTGAAAAAAGCAGGAGTTGATATGGCAACTCCTAATCCGGTGGATGATGCACTAAA
AGTATTTGAACAAAGATTAGATGAACTAGAAAAATTAGTTAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A3D7VFE2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.014

98.502

0.503


Multiple sequence alignment