Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FIU05_RS12400 Genome accession   NZ_CP040987
Coordinates   2735299..2735778 (-) Length   159 a.a.
NCBI ID   WP_015444870.1    Uniprot ID   -
Organism   Legionella pneumophila strain FDAARGOS_779     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2730299..2740778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU05_RS12360 (FIU05_12360) rplO 2730430..2730864 (+) 435 WP_010946097.1 50S ribosomal protein L15 -
  FIU05_RS12365 (FIU05_12365) secY 2730867..2732195 (+) 1329 WP_014840959.1 preprotein translocase subunit SecY -
  FIU05_RS12370 (FIU05_12370) rpmJ 2732212..2732325 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  FIU05_RS12375 (FIU05_12375) rpsM 2732403..2732759 (+) 357 WP_010946100.1 30S ribosomal protein S13 -
  FIU05_RS12380 (FIU05_12380) rpsK 2732783..2733181 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  FIU05_RS12385 (FIU05_12385) rpsD 2733198..2733818 (+) 621 WP_010946102.1 30S ribosomal protein S4 -
  FIU05_RS12390 (FIU05_12390) - 2733837..2734829 (+) 993 WP_010946103.1 DNA-directed RNA polymerase subunit alpha -
  FIU05_RS12395 (FIU05_12395) rplQ 2734848..2735231 (+) 384 WP_010946104.1 50S ribosomal protein L17 -
  FIU05_RS12400 (FIU05_12400) ssb 2735299..2735778 (-) 480 WP_015444870.1 single-stranded DNA-binding protein Machinery gene
  FIU05_RS12405 (FIU05_12405) - 2735862..2737229 (-) 1368 WP_010946106.1 MFS transporter -
  FIU05_RS12410 (FIU05_12410) fabL 2737391..2738149 (+) 759 WP_010946107.1 enoyl-[acyl-carrier-protein] reductase FabL -
  FIU05_RS12415 (FIU05_12415) - 2738220..2738633 (+) 414 WP_010946108.1 acyl carrier protein -
  FIU05_RS12420 (FIU05_12420) - 2738633..2739529 (+) 897 WP_015444869.1 hypothetical protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17643.40 Da        Isoelectric Point: 4.6616

>NTDB_id=368458 FIU05_RS12400 WP_015444870.1 2735299..2735778(-) (ssb) [Legionella pneumophila strain FDAARGOS_779]
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSATNYDDMPSFQGTSTPQQASTKNQATPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=368458 FIU05_RS12400 WP_015444870.1 2735299..2735778(-) (ssb) [Legionella pneumophila strain FDAARGOS_779]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGACAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTAGTCTGTTTTAATCGTCTGGGTGAAATAGCCGGAGAATACATTCGCAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGCCAAGATAGATATACAACTGAAATTGTTGCGTCTGACATTCA
AATGCTCGATAGCAAAGGAAGTAGTGCCACTAATTACGACGACATGCCTTCATTTCAGGGAACCTCTACCCCTCAACAAG
CTTCAACAAAAAATCAAGCAACTCCAACATCTACTGCACAAGATGCTTTTGATGAATTAGATGATGACATACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.579
  ssb Vibrio cholerae strain A1552

49.143

100

0.541
  ssb Neisseria gonorrhoeae MS11

39.655

100

0.434
  ssb Neisseria meningitidis MC58

39.655

100

0.434

Multiple sequence alignment