Detailed information NTG0368426

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: FGZ14_RS15605
• Genome accession: NZ_CP040936
• Coordinates: 3686604..3687995 (-)
• Length: 463 a.a.
• NCBI ID: WP_139925136.1
• Uniprot ID: -
• Organism: Hymenobacter sp. DG01
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3681604..3692995

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGZ14_RS15585	-	3681712..3682686 (-)	975	WP_139925132.1	hypothetical protein	-
FGZ14_RS15590	-	3682818..3683435 (-)	618	WP_139925133.1	helix-turn-helix domain-containing protein	-
FGZ14_RS15595	-	3683677..3684699 (-)	1023	WP_139925134.1	SPASM domain-containing protein	-
FGZ14_RS15600	-	3684871..3686325 (-)	1455	WP_139925135.1	redoxin family protein	-
FGZ14_RS15605	radA	3686604..3687995 (-)	1392	WP_139925136.1	DNA repair protein RadA	Machinery gene
FGZ14_RS15610	-	3688304..3689710 (+)	1407	WP_139925137.1	sensor histidine kinase	-
FGZ14_RS22260	-	3689844..3691469 (+)	1626	WP_308217155.1	FAD-dependent oxidoreductase	-
FGZ14_RS15620	-	3691716..3692543 (+)	828	WP_139925138.1	metallophosphoesterase	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 50440.74 Da
• Isoelectric Point: 6.5027

>NTDB_id=368426 FGZ14_RS15605 WP_139925136.1 3686604..3687995(-) (radA) [Hymenobacter sp. DG01]
MAKVKTLFFCQNCGAQSAKWIGRCPSCGEWNTYVEEVIEKADNNPAANAWKASTSVGSTTNKAAKPKPLGDIIYEEESRL
NTHDAELNRVLGGGLVPGSLVLIGGEPGIGKSTLMLQIAMQLRNLRILYVSGEESEQQIKMRAERLGQQHQGLYILTETN
TQNIFRQIDQLQPNVVVVDSIQTLHSTIVEAGPGSVSQVRECTTELLKYAKDTGVPVLLIGHITKDGSIAGPKILEHMVD
TVLQFEGDRHLTYRILRTIKNRFGSTSELGIYEMQGAGLRQVNNPSEILLSQRTEQLSGIAIGATLEGNRPLLVEVQALV
TPATYGTPQRSSTGFDSKRLQMLLAVLEKRSGLRLGQHDVFLNIAGGLRLEDPALDLAVCAAVVSSLNDVPIRNEICLAA
EVGLSGEIRAVSRLDQRLSESEKLGFAEMYISQFNAKGLDLARYGIRVHPAGRLDEVLTGLFG

Nucleotide

• Length: 1392 bp

>NTDB_id=368426 FGZ14_RS15605 WP_139925136.1 3686604..3687995(-) (radA) [Hymenobacter sp. DG01]
ATGGCCAAAGTAAAAACCCTGTTTTTCTGCCAGAACTGTGGCGCTCAATCGGCTAAATGGATTGGCCGCTGCCCCAGCTG
TGGCGAGTGGAATACCTACGTGGAAGAGGTAATTGAGAAGGCTGACAACAACCCGGCGGCCAACGCCTGGAAGGCCTCCA
CCTCCGTGGGCTCAACTACCAATAAAGCGGCCAAGCCCAAGCCCCTCGGCGACATTATTTATGAAGAAGAGTCGCGCCTG
AATACTCACGACGCGGAGCTGAACCGCGTGCTGGGCGGCGGGCTGGTGCCGGGCTCCCTGGTGCTCATTGGGGGCGAGCC
GGGCATTGGCAAAAGCACCCTGATGCTTCAAATTGCTATGCAGCTGCGCAACCTGCGCATCCTCTACGTTTCGGGTGAGG
AAAGCGAGCAGCAGATCAAGATGCGAGCCGAGCGCCTGGGCCAGCAGCACCAGGGCCTCTACATCCTCACCGAAACCAAT
ACCCAGAACATCTTCCGCCAGATCGACCAGCTACAGCCTAACGTAGTAGTCGTCGATTCCATCCAGACCCTGCACAGCAC
CATTGTGGAGGCCGGGCCGGGCTCCGTGAGCCAGGTGCGCGAGTGCACCACCGAACTGCTCAAGTACGCGAAGGACACGG
GTGTGCCGGTGCTGCTCATTGGCCACATCACCAAGGATGGCTCCATTGCCGGCCCCAAAATTCTGGAGCACATGGTAGAT
ACCGTGCTGCAGTTTGAGGGCGACCGGCACCTGACCTACCGCATTCTGCGCACCATCAAGAACCGCTTCGGCTCCACTTC
TGAGCTGGGCATTTATGAGATGCAGGGTGCCGGGCTGCGGCAGGTAAACAATCCTTCCGAGATTCTGCTGAGCCAGCGCA
CCGAGCAGCTCAGCGGTATTGCCATTGGGGCCACTTTGGAAGGCAACCGCCCCCTGCTGGTGGAGGTGCAGGCTCTGGTA
ACGCCGGCCACATACGGCACCCCCCAGCGCTCCTCCACGGGCTTCGACAGTAAGCGCCTGCAGATGCTGCTGGCTGTACT
GGAAAAGCGGAGCGGCCTGCGCCTGGGACAGCACGACGTGTTTCTGAACATTGCCGGCGGCCTGCGCCTGGAAGATCCCG
CCCTGGACTTGGCCGTGTGCGCCGCAGTAGTTAGCTCCCTGAATGACGTGCCGATCCGGAACGAAATCTGCCTGGCGGCG
GAGGTAGGCCTAAGCGGCGAAATCAGGGCGGTAAGCCGCCTGGATCAGCGCCTGAGCGAATCGGAAAAGCTGGGCTTCGC
CGAAATGTACATTTCGCAGTTCAACGCCAAGGGCCTCGACCTGGCCCGGTACGGGATTCGGGTGCACCCGGCGGGGCGGC
TCGATGAGGTACTGACGGGCCTGTTCGGGTAG

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-35)

• AAA domain (AAA_25) (76-227)

• Subunit ChlI of Mg-chelatase (ChlI) (349-433)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	50.968	100	0.512
radA	Streptococcus pneumoniae Rx1	48.922	100	0.49
radA	Streptococcus pneumoniae D39	48.922	100	0.49
radA	Streptococcus pneumoniae R6	48.922	100	0.49
radA	Streptococcus pneumoniae TIGR4	48.922	100	0.49
radA	Streptococcus mitis NCTC 12261	48.707	100	0.488
radA	Streptococcus mitis SK321	48.707	100	0.488