Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FH041_RS13685 Genome accession   NZ_CP040930
Coordinates   2969788..2971158 (-) Length   456 a.a.
NCBI ID   WP_023534442.1    Uniprot ID   A0A0S4I6M7
Organism   Pseudomonas sp. SWI7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2964788..2976158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH041_RS13670 (FH041_13670) - 2966783..2967517 (+) 735 WP_165919226.1 lytic polysaccharide monooxygenase auxiliary activity family 9 protein -
  FH041_RS13675 (FH041_13675) - 2967580..2967945 (+) 366 WP_027914394.1 PilZ domain-containing protein -
  FH041_RS13680 (FH041_13680) - 2968208..2969725 (+) 1518 WP_027914393.1 nucleobase:cation symporter-2 family protein -
  FH041_RS13685 (FH041_13685) radA 2969788..2971158 (-) 1371 WP_023534442.1 DNA repair protein RadA Machinery gene
  FH041_RS13690 (FH041_13690) mscL 2971338..2971748 (+) 411 WP_023534347.1 large-conductance mechanosensitive channel protein MscL -
  FH041_RS13695 (FH041_13695) - 2971827..2972603 (-) 777 WP_027914392.1 ferredoxin--NADP reductase -
  FH041_RS13700 (FH041_13700) - 2972809..2973516 (+) 708 WP_027914391.1 autoinducer binding domain-containing protein -
  FH041_RS13705 (FH041_13705) - 2973614..2974738 (+) 1125 WP_028687617.1 methyltransferase -
  FH041_RS13710 (FH041_13710) - 2974814..2974966 (-) 153 WP_033737044.1 DUF2474 domain-containing protein -
  FH041_RS13715 (FH041_13715) cydB 2974978..2975985 (-) 1008 WP_027914389.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48784.20 Da        Isoelectric Point: 6.8985

>NTDB_id=368375 FH041_RS13685 WP_023534442.1 2969788..2971158(-) (radA) [Pseudomonas sp. SWI7]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSTGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTE
LDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETII
ATARQEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHL
ANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLS
GEVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=368375 FH041_RS13685 WP_023534442.1 2969788..2971158(-) (radA) [Pseudomonas sp. SWI7]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGCGCGACTTTTCCGAAATGGGCTGGCCAGTGTGGCGAGTG
TGGCGCCTGGAACACGCTGGTCGAAACCATGATCGAGAGCGGCGGCGCCGCAGCCCCCAGCACGGGCCGCGCCGGCTGGA
CGGGGCAGCAGGCGCAGATCAAGACCCTGGCTGAGGTCAGCGTCGAGGAGATACCGCGCTTCACCACCAGCAGCACCGAG
CTCGACCGTGTGCTGGGCGGTGGCCTGGTCGATGGCTCCGTGGTCTTGATCGGTGGCGACCCTGGGATCGGCAAATCGAC
GATTCTGCTGCAGACCCTGTGCAATATCGCCGTCGGCATGCCGGCGTTGTACGTCACTGGCGAGGAATCCCAGCAGCAGG
TGGCCATGCGCTCCCGGCGTCTGGGCCTTCCCCAGGACCAGCTCAAGGTCATGACCGAAACCTGCATCGAAACCATCATC
GCCACCGCCCGTCAGGAAAAGCCACGGGTAATGGTGATCGACTCCATCCAGACCATCTTCACCGAACAGTTGCAATCCGC
CCCGGGCGGGGTGGCGCAGGTGCGTGAAAGTACGGCGCTGCTGGTGCGTTATGCCAAGCAAAGTGGCACAGCGATCTTCC
TGGTGGGCCACGTGACCAAGGAGGGCTCGCTGGCAGGCCCGCGGGTGCTGGAGCACATGGTCGATACCGTGTTGTATTTC
GAGGGCGAATCCGACGGTCGCCTGCGGCTGCTGCGAGCGGTGAAGAACCGCTTCGGCGCGGTAAACGAGCTGGGCGTGTT
CGGCATGACCGACCGGGGTTTGAAAGAGGTCTCCAACCCCTCGGCGATCTTTCTCAATCGCACCCAGGAAGAAGTCCCTG
GCAGCGTCGTGATGGCCACTTGGGAAGGTACCCGGCCGATGCTGGTCGAGGTCCAGGCCCTGGTCGATGACAGCCACCTG
GCCAACCCGCGCCGCGTCACCCTGGGCCTGGATCAGAACCGTCTGGCCATGCTGCTGGCCGTTCTGCACCGGCATGGGGG
CATCCCGACCCACGATCAGGATGTGTTCCTGAACGTGGTGGGCGGTGTGAAAGTGCTGGAAACGGCTTCGGACCTGGCGT
TACTCGCTGCGGTCATGTCCAGCCTGCGCAATCGGCCGCTGGCCCATGGCCTGCTGGTGTTCGGGGAAATCGGCCTGTCG
GGTGAGGTGCGGCCTGTACCCAGTGGCCAGGAGCGGCTCAAGGAGGCTGCCAAGCACGGCTTCAAGCGTGCCATCGTGCC
CAAGGGCAATGCACCCAAGGAGGCGCCTGCAGGGTTGCAGGTCATCGCTGTGACGCGCCTTGAGCAGGCGCTGGATGCCT
TGTTCGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(355-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S4I6M7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.487
  radA Streptococcus pneumoniae Rx1

46.087

100

0.465
  radA Streptococcus pneumoniae D39

46.087

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.465
  radA Streptococcus pneumoniae R6

46.087

100

0.465
  radA Streptococcus mitis NCTC 12261

45.87

100

0.463
  radA Streptococcus mitis SK321

46.053

100

0.461

Multiple sequence alignment