Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   FH041_RS10850 Genome accession   NZ_CP040930
Coordinates   2358428..2359063 (-) Length   211 a.a.
NCBI ID   WP_104925955.1    Uniprot ID   -
Organism   Pseudomonas sp. SWI7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2353428..2364063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH041_RS10820 (FH041_10820) murB 2354530..2355549 (-) 1020 WP_104925957.1 UDP-N-acetylmuramate dehydrogenase -
  FH041_RS10825 (FH041_10825) - 2355546..2356010 (-) 465 WP_027914351.1 low molecular weight protein-tyrosine-phosphatase -
  FH041_RS10830 (FH041_10830) kdsB 2356010..2356771 (-) 762 WP_023533083.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FH041_RS10835 (FH041_10835) - 2356768..2356953 (-) 186 WP_003247142.1 Trm112 family protein -
  FH041_RS10840 (FH041_10840) lpxK 2356996..2357997 (-) 1002 WP_104925956.1 tetraacyldisaccharide 4'-kinase -
  FH041_RS10845 (FH041_10845) - 2357997..2358431 (-) 435 WP_028687688.1 biopolymer transporter ExbD -
  FH041_RS10850 (FH041_10850) exbB 2358428..2359063 (-) 636 WP_104925955.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  FH041_RS10855 (FH041_10855) comA 2359125..2361341 (-) 2217 WP_140174562.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FH041_RS10860 (FH041_10860) - 2361484..2362116 (+) 633 WP_115933573.1 DUF2062 domain-containing protein -
  FH041_RS10865 (FH041_10865) - 2362000..2362779 (-) 780 WP_023533108.1 ABC transporter permease -
  FH041_RS10870 (FH041_10870) - 2362776..2363708 (-) 933 WP_027914346.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22817.09 Da        Isoelectric Point: 7.3616

>NTDB_id=368372 FH041_RS10850 WP_104925955.1 2358428..2359063(-) (exbB) [Pseudomonas sp. SWI7]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVSPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMAANASVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=368372 FH041_RS10850 WP_104925955.1 2358428..2359063(-) (exbB) [Pseudomonas sp. SWI7]
GTGTGGGAATTGGTCAAGTCAGGCGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCAGTCCGCCTCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGACTCGCCCCTGGGGGAGATCCTCGCGGCAGGGCTGGCCAAC
TCGCGTCATGGTCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATCCACGAGCTGGAGCGCTACAT
CAGCACGCTGGGCACCATTGCCGCCATGGCGCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCGTTCATGGGGTCGCAGATGGCCGCCAACGCCTCGGTGCTGGCGGGCGGTATTTCAAAGGCCCTGGTAACCACCGCA
GCCGGGCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAACTGGTGGAAGTGATTCAGGGGGACCGCGAGGTGGAAGTGGCGGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment