Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FHY60_RS15560 Genome accession   NZ_CP040924
Coordinates   3379316..3380683 (-) Length   455 a.a.
NCBI ID   WP_139905895.1    Uniprot ID   -
Organism   Clostridium thermarum strain SYSU GA15002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3374316..3385683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHY60_RS15540 ispD 3375650..3376342 (-) 693 WP_139905891.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FHY60_RS15545 - 3376355..3377464 (-) 1110 WP_139905892.1 PIN/TRAM domain-containing protein -
  FHY60_RS15550 - 3377744..3378142 (+) 399 WP_139905893.1 DUF1573 domain-containing protein -
  FHY60_RS15555 disA 3378192..3379256 (-) 1065 WP_139905894.1 DNA integrity scanning diadenylate cyclase DisA -
  FHY60_RS15560 radA 3379316..3380683 (-) 1368 WP_139905895.1 DNA repair protein RadA Machinery gene
  FHY60_RS15565 - 3380882..3383323 (-) 2442 WP_139905896.1 ATP-dependent Clp protease ATP-binding subunit -
  FHY60_RS15570 - 3383353..3384378 (-) 1026 WP_139905897.1 protein arginine kinase -
  FHY60_RS15575 - 3384380..3384904 (-) 525 WP_139905898.1 UvrB/UvrC motif-containing protein -
  FHY60_RS15580 - 3384921..3385379 (-) 459 WP_139905899.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50303.13 Da        Isoelectric Point: 6.7523

>NTDB_id=368335 FHY60_RS15560 WP_139905895.1 3379316..3380683(-) (radA) [Clostridium thermarum strain SYSU GA15002]
MAKVKTVYVCQQCGYESPKWLGKCPDCSAWNSMIEEQKQEKVQPRYAALDTRSVPKSIVHIKSGNIERFDTGIEELNRVL
GGGLVKGSLTLISGDPGIGKSTLLLQTSNNIAKRYGKVLYVSGEESEEQIKIRGDRLNIVSENLYILSETNLELIHQHID
EMKPAFVIIDSIQTLYKDSISSAPGSVSQVRECSNHMMRLAKTNDIPFFIVAHVTKQGELAGPRVLEHMVDTVLSFEGER
TEDIRVLRAVKNRFGTTSEIGVFEMKDVGLMEISDPSRLFLEDASFNAEGSVIIGVMEGTRPILVEIQALVTETKTANPR
RTSVGIETSRLNLILAVLEKKLRIPFYNFDVYVNVVGGLNIDGTYADLGLALALLSSIRGKEFKLEKMMVVGEVGLTGEV
RPIGACDRLVKEAYKLGFKNVVIPEKNKASVDPKLVNTILVSSLKEVSYKVFDAS

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=368335 FHY60_RS15560 WP_139905895.1 3379316..3380683(-) (radA) [Clostridium thermarum strain SYSU GA15002]
TTGGCAAAAGTTAAAACTGTTTACGTATGTCAACAGTGTGGTTATGAATCACCAAAGTGGTTGGGAAAATGTCCGGATTG
CAGTGCATGGAATAGTATGATAGAGGAGCAAAAACAAGAAAAGGTGCAGCCAAGATACGCTGCTCTGGATACACGGAGCG
TTCCAAAAAGTATTGTACATATTAAATCAGGAAATATAGAGAGATTTGACACCGGCATCGAAGAGTTAAACAGGGTTCTG
GGTGGTGGCCTGGTTAAAGGGTCATTAACTTTGATATCAGGTGATCCTGGAATAGGAAAGTCCACTTTATTACTGCAAAC
CAGCAATAATATTGCTAAAAGATATGGAAAGGTGCTCTATGTTTCTGGAGAGGAGTCAGAAGAACAGATTAAAATCAGAG
GGGATAGGCTGAATATAGTTTCGGAAAATCTTTATATTTTGTCTGAAACTAACTTAGAACTTATTCATCAACATATAGAT
GAAATGAAACCGGCTTTTGTCATTATAGATTCAATTCAGACTTTATACAAGGACAGTATTTCATCGGCTCCGGGAAGTGT
TTCACAAGTTAGAGAGTGCTCTAACCATATGATGAGACTGGCTAAGACTAATGATATTCCGTTTTTTATTGTAGCGCATG
TTACTAAACAGGGAGAGCTGGCTGGGCCAAGAGTACTGGAACATATGGTGGATACAGTGTTGTCCTTTGAAGGGGAAAGG
ACAGAGGATATAAGGGTACTGAGAGCTGTAAAGAACAGGTTTGGTACCACCAGTGAAATCGGGGTATTCGAAATGAAAGA
TGTGGGTCTCATGGAAATCTCAGATCCCTCCAGACTATTTCTTGAGGATGCAAGCTTTAATGCTGAGGGTTCCGTTATAA
TAGGGGTCATGGAAGGAACACGTCCAATTTTAGTAGAAATTCAAGCCTTGGTTACAGAAACAAAAACTGCTAACCCCAGA
AGAACTTCTGTAGGTATAGAAACTTCTAGACTGAACCTAATTCTTGCAGTTTTAGAGAAGAAGCTTAGAATTCCCTTTTA
TAATTTTGACGTCTACGTGAATGTTGTTGGAGGGCTTAACATTGATGGAACCTATGCAGACTTAGGCTTGGCACTTGCAC
TGCTATCCAGTATACGAGGCAAAGAATTCAAATTGGAAAAAATGATGGTGGTGGGAGAAGTAGGACTTACCGGAGAGGTT
AGGCCTATTGGTGCCTGTGATAGATTGGTAAAAGAGGCCTATAAGCTTGGGTTCAAGAATGTAGTTATACCTGAAAAAAA
TAAGGCATCAGTAGATCCGAAGCTAGTAAATACTATACTGGTTTCTTCACTAAAGGAAGTATCTTATAAAGTATTTGATG
CCAGCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(60-218)

Subunit ChlI of Mg-chelatase (ChlI)

(345-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.434

99.341

0.521
  radA Streptococcus mitis NCTC 12261

49.559

99.78

0.495
  radA Streptococcus pneumoniae Rx1

49.559

99.78

0.495
  radA Streptococcus pneumoniae TIGR4

49.559

99.78

0.495
  radA Streptococcus pneumoniae D39

49.559

99.78

0.495
  radA Streptococcus pneumoniae R6

49.559

99.78

0.495
  radA Streptococcus mitis SK321

49.339

99.78

0.492

Multiple sequence alignment