Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilS   Type   Regulator
Locus tag   E8E07_RS17440 Genome accession   NZ_CP040911
Coordinates   3571913..3573481 (+) Length   522 a.a.
NCBI ID   WP_198912078.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AB17H194     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 3566913..3578481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8E07_RS17420 hom 3567406..3568707 (+) 1302 WP_002121263.1 homoserine dehydrogenase -
  E8E07_RS17425 thrC 3568762..3569901 (+) 1140 WP_002048893.1 threonine synthase -
  E8E07_RS17430 pbpG 3570008..3571054 (-) 1047 WP_005065720.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  E8E07_RS17435 gacA 3571267..3571902 (+) 636 WP_002121174.1 response regulator -
  E8E07_RS17440 pilS 3571913..3573481 (+) 1569 WP_198912078.1 sensor histidine kinase Regulator
  E8E07_RS17445 pilR 3573505..3574917 (+) 1413 WP_086398701.1 sigma-54-dependent transcriptional regulator Regulator
  E8E07_RS17450 ctpA 3574921..3576105 (-) 1185 WP_002121269.1 S41 family peptidase -
  E8E07_RS17455 gpmI 3576121..3577668 (-) 1548 WP_075384045.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence


Protein


Download         Length: 522 a.a.        Molecular weight: 59194.79 Da        Isoelectric Point: 6.4280

>NTDB_id=368270 E8E07_RS17440 WP_198912078.1 3571913..3573481(+) (pilS) [Acinetobacter pittii strain AB17H194]
MQFPVNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPTLYSYTLLGYSLLSLLQLLCFKFIATQATRQ
LILFFIVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAIIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDSEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIKLNDFIKTLLDEDLSDIK
HEIQLKISDSSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=368270 E8E07_RS17440 WP_198912078.1 3571913..3573481(+) (pilS) [Acinetobacter pittii strain AB17H194]
ATGCAATTTCCCGTAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGTCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCACTTTATATTCTT
ACACACTACTCGGCTATTCGCTCTTAAGCCTTCTTCAACTTTTATGCTTTAAGTTTATTGCTACTCAGGCAACTAGGCAG
CTCATTTTATTTTTTATAGTTGATATTATCTGTCTGAGTTTACTGACATTTTCAGTAGGCGAACCCAATCTTCAACTCAG
CTTGCTCTATGTGATTGCCATATTTACTTCGGCCATTTTACTTAGCGCAAGAATGTCGTTGCTCATTACATTACTTGCAG
TCATTGCCATTATTTATCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCCTTA
TTGGCCTTCTTGTTTTTTGTAGTACATGGAATCGGACAAATTGCGGTCCAACGCTTTAAATTACTTGAAGCGCTAACTTT
CCATCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATTTTGGAACAAATTGAAGAGGGCTATTTAGTTC
TAGATGAAAACTACGACATTGTTTTAAGTAACCCAGCCGCCTGCTCTCTTTTAGGAATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATTCTTAAGTTTGATAACCTAAAAGAAGGTGATCGATTTAT
TTTTGAGTCCCGACTGTCGGCTTATTCCATTAATATTAAAGTGCAACATCTTTTGGTGCCACAGCAAGCATTAACACTAC
TCATCTTACAAGATGCGCAGCAGATTAATCAGCAAGCTCAACAACTCAAACTTGCTGCTTTAGGACAACTCTCAGCAAGT
ATTGCCCATGAGATCCGTAACCCTCTTGCAGCCATTGTTCAAGCAAATGAATTGCTCAAAGATAGTGATTCAGAACAGCA
AAACACTTTGCGCAATATGATTGGTAAGCAAACGAAACGCATTGATAGTATTGTTCAAGACACCTTAGGACTTGCCCGCA
GTGAAAGAACATACCCCATCCAGATTAAACTAAACGACTTCATAAAAACGTTATTAGATGAAGATTTATCTGATATTAAA
CATGAGATCCAGCTTAAAATTTCCGATTCATCTTTAAAACTCTTATTCGATGAAAAGCAACTCAGACAAGTGCTAATTAA
CCTTGTTAGGAATGCTCTACGGCACAATGCTCCCGATTCGCCCTATGTTCTGATCAATATCCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.828

100

0.948


Multiple sequence alignment