Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GZS07_RS05840 Genome accession   NZ_CP048367
Coordinates   1209744..1210259 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 164     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1204744..1215259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZS07_RS05795 (GZS08_05790) csrA 1205331..1205516 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  GZS07_RS05825 (GZS08_05820) yqaB 1206974..1207540 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  GZS07_RS05830 (GZS08_05825) yqaA 1207537..1207965 (+) 429 WP_039023139.1 YqaA family protein -
  GZS07_RS05835 (GZS08_05830) gshA 1208038..1209594 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  GZS07_RS05840 (GZS08_05835) luxS 1209744..1210259 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  GZS07_RS05845 (GZS08_05840) emrB 1210323..1211861 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  GZS07_RS05850 (GZS08_05845) emrA 1211878..1213050 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  GZS07_RS05855 (GZS08_05850) emrR 1213177..1213707 (-) 531 WP_000378447.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  GZS07_RS05865 (GZS08_05860) ygaH 1213798..1214133 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  GZS07_RS05870 (GZS08_05865) ygaZ 1214123..1214860 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=368263 GZS07_RS05840 WP_001130211.1 1209744..1210259(+) (luxS) [Escherichia coli strain 164]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=368263 GZS07_RS05840 WP_001130211.1 1209744..1210259(+) (luxS) [Escherichia coli strain 164]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731