Detailed information NTG0368260

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GZS07_RS05565
• Genome accession: NZ_CP048367
• Coordinates: 1156925..1157917 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 164
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1151925..1162917

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GZS07_RS05535 (GZS08_05530)	ispD	1151986..1152696 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GZS07_RS05540 (GZS08_05535)	ispF	1152696..1153175 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GZS07_RS05545 (GZS08_05540)	truD	1153172..1154221 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
GZS07_RS05550 (GZS08_05545)	surE	1154202..1154963 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GZS07_RS05555 (GZS08_05550)	pcm	1154957..1155583 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GZS07_RS05560 (GZS08_05555)	nlpD	1155768..1156862 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
GZS07_RS05565 (GZS08_05560)	rpoS	1156925..1157917 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GZS07_RS05570 (GZS08_05565)	ygbN	1158011..1159375 (-)	1365	WP_000104441.1	GntP family transporter	-
GZS07_RS05575 (GZS08_05570)	ygbM	1159464..1160240 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
GZS07_RS05580 (GZS08_05575)	ygbL	1160245..1160883 (-)	639	WP_001278994.1	aldolase	-
GZS07_RS05585 (GZS08_05580)	otnK	1160880..1162142 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=368260 GZS07_RS05565 WP_000081550.1 1156925..1157917(+) (rpoS) [Escherichia coli strain 164]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=368260 GZS07_RS05565 WP_000081550.1 1156925..1157917(+) (rpoS) [Escherichia coli strain 164]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715