Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GZS09_RS08565 Genome accession   NZ_CP048359
Coordinates   1804455..1805882 (-) Length   475 a.a.
NCBI ID   WP_000980608.1    Uniprot ID   -
Organism   Escherichia coli strain 53     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1799455..1810882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZS09_RS08535 (GZS09_08535) yeeZ 1799510..1800334 (+) 825 WP_000754763.1 SDR family oxidoreductase -
  GZS09_RS08540 (GZS09_08540) yeeY 1800380..1801309 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  GZS09_RS08545 (GZS09_08545) yoeI 1801524..1801586 (+) 63 WP_010723108.1 membrane protein YoeI -
  GZS09_RS08550 (GZS09_08550) plaP 1801576..1802934 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GZS09_RS08555 (GZS09_08555) tsuA 1803113..1804171 (+) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  GZS09_RS08560 (GZS09_08560) tsuB 1804185..1804412 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GZS09_RS08565 (GZS09_08565) sbcB 1804455..1805882 (-) 1428 WP_000980608.1 exodeoxyribonuclease I Machinery gene
  GZS09_RS08570 (GZS09_08570) dacD 1806091..1807257 (+) 1167 WP_085668764.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GZS09_RS08575 (GZS09_08575) sbmC 1807376..1807849 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  GZS09_RS08580 (GZS09_08580) yeeA 1808047..1809105 (+) 1059 WP_085668766.1 FUSC family protein -
  GZS09_RS08585 (GZS09_08585) tmaR 1809277..1809606 (+) 330 WP_000450409.1 DUF496 family protein -
  GZS09_RS08590 (GZS09_08590) - 1809707..1809889 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  GZS09_RS08595 (GZS09_08595) - 1809961..1810089 (+) 129 Protein_1696 transposase domain-containing protein -
  GZS09_RS08600 (GZS09_08600) - 1810378..1810458 (-) 81 Protein_1697 hypothetical protein -
  GZS09_RS08605 (GZS09_08605) - 1810558..1810707 (-) 150 Protein_1698 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54457.75 Da        Isoelectric Point: 5.6070

>NTDB_id=368187 GZS09_RS08565 WP_000980608.1 1804455..1805882(-) (sbcB) [Escherichia coli strain 53]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=368187 GZS09_RS08565 WP_000980608.1 1804455..1805882(-) (sbcB) [Escherichia coli strain 53]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGGATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTTCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581