Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GZS11_RS18370 Genome accession   NZ_CP048344
Coordinates   3828411..3828851 (+) Length   146 a.a.
NCBI ID   WP_000360895.1    Uniprot ID   B7LFX5
Organism   Escherichia coli strain 124     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3823411..3833851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZS11_RS18350 (GZS11_18350) aroP 3824409..3825782 (+) 1374 WP_001347572.1 aromatic amino acid transporter AroP -
  GZS11_RS18355 (GZS11_18355) ampE 3825825..3826679 (-) 855 WP_000172000.1 beta-lactamase regulator AmpE -
  GZS11_RS18360 (GZS11_18360) ampD 3826676..3827227 (-) 552 WP_000923721.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GZS11_RS18365 (GZS11_18365) nadC 3827315..3828208 (+) 894 WP_001135174.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GZS11_RS18370 (GZS11_18370) pilA 3828411..3828851 (+) 441 WP_000360895.1 prepilin peptidase-dependent pilin Machinery gene
  GZS11_RS18375 (GZS11_18375) pilB 3828861..3830246 (+) 1386 WP_001025174.1 type II secretion system protein GspE Machinery gene
  GZS11_RS18380 (GZS11_18380) hofC 3830236..3831438 (+) 1203 WP_000157236.1 protein transport protein HofC -
  GZS11_RS18385 (GZS11_18385) guaC 3831473..3832516 (-) 1044 WP_001217338.1 GMP reductase -
  GZS11_RS23895 - 3832672..3832716 (-) 45 WP_120795372.1 protein YacM -
  GZS11_RS18390 (GZS11_18390) coaE 3832741..3833361 (+) 621 WP_001269520.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15602.71 Da        Isoelectric Point: 4.3927

>NTDB_id=368131 GZS11_RS18370 WP_000360895.1 3828411..3828851(+) (pilA) [Escherichia coli strain 124]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTH
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN

Nucleotide


Download         Length: 441 bp        

>NTDB_id=368131 GZS11_RS18370 WP_000360895.1 3828411..3828851(+) (pilA) [Escherichia coli strain 124]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCAC
TATGTTTCAGCCATGAGTGTGGCAAAAGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGACTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7LFX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

43.089

84.247

0.363