Detailed information NTG0368093

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GZS11_RS05105
• Genome accession: NZ_CP048344
• Coordinates: 1061426..1062418 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 124
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1056426..1067418

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GZS11_RS05075 (GZS11_05075)	ispD	1056487..1057197 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GZS11_RS05080 (GZS11_05080)	ispF	1057197..1057676 (+)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GZS11_RS05085 (GZS11_05085)	truD	1057673..1058722 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
GZS11_RS05090 (GZS11_05090)	surE	1058703..1059464 (+)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
GZS11_RS05095 (GZS11_05095)	pcm	1059458..1060084 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GZS11_RS05100 (GZS11_05100)	nlpD	1060269..1061363 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
GZS11_RS05105 (GZS11_05105)	rpoS	1061426..1062418 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GZS11_RS05110 (GZS11_05110)	ygbN	1062512..1063876 (-)	1365	WP_000104456.1	GntP family transporter	-
GZS11_RS05115 (GZS11_05115)	ygbM	1063965..1064741 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
GZS11_RS05120 (GZS11_05120)	ygbL	1064746..1065384 (-)	639	WP_001278994.1	aldolase	-
GZS11_RS05125 (GZS11_05125)	otnK	1065381..1066643 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=368093 GZS11_RS05105 WP_000081550.1 1061426..1062418(+) (rpoS) [Escherichia coli strain 124]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=368093 GZS11_RS05105 WP_000081550.1 1061426..1062418(+) (rpoS) [Escherichia coli strain 124]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715