Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FHG12_RS08400 Genome accession   NZ_CP040896
Coordinates   2061350..2062735 (+) Length   461 a.a.
NCBI ID   WP_139515305.1    Uniprot ID   -
Organism   Hymenobacter jejuensis strain 17J68-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2056350..2067735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHG12_RS08380 (FHG12_08380) - 2056916..2057404 (+) 489 WP_139515301.1 hypothetical protein -
  FHG12_RS08385 (FHG12_08385) - 2057640..2057879 (-) 240 WP_139515302.1 hypothetical protein -
  FHG12_RS08390 (FHG12_08390) - 2058027..2059676 (-) 1650 WP_139515303.1 FAD-dependent oxidoreductase -
  FHG12_RS08395 (FHG12_08395) - 2059787..2061175 (-) 1389 WP_139515304.1 sensor histidine kinase -
  FHG12_RS08400 (FHG12_08400) radA 2061350..2062735 (+) 1386 WP_139515305.1 DNA repair protein RadA Machinery gene
  FHG12_RS08405 (FHG12_08405) - 2062957..2064390 (+) 1434 WP_165699343.1 redoxin family protein -
  FHG12_RS08410 (FHG12_08410) - 2064551..2066050 (+) 1500 WP_139515307.1 glycosyltransferase family 39 protein -
  FHG12_RS08415 (FHG12_08415) - 2066139..2067230 (+) 1092 WP_139515308.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50078.34 Da        Isoelectric Point: 6.3144

>NTDB_id=368075 FHG12_RS08400 WP_139515305.1 2061350..2062735(+) (radA) [Hymenobacter jejuensis strain 17J68-5]
MAKLKTLYFCQNCGAQSAKWIGRCPSCGEWNTYVEEVVQKENTQATGSWKPPTSSPGTKTVAKPRAIGEIHFEEEARINT
QDAELNRVLGGGLVLGSLVLIGGEPGIGKSTLMLQIAMNLRQLKVLYVSGEESEQQIKMRAERLGPQHPDCYILTETNTQ
NIFKQIDQLQPNVVVIDSIQTLHSGLVESGAGSVSQVRECTAELLKYAKETGVPVLIIGHITKDGSIAGPKILEHMVDTV
LQFEGDRHLSYRILRTTKNRFGSTSELGIYEMQGTGLRQVSNPSEILLSQRTDNLSGMAIGATLEGNRPLLVEVQALVTP
ATYGTPQRSSTGFDAKRLNMLLAVLEKRSGLRLGQHDVFLNIAGGLRLDDPALDVAVCAAVVSSLNDIPIPGEVCLASEV
GLSGEIRAVSRLDQRLSEAEKLGFQEMYISQFNAKGLDLGRYGIRVHPVGRLDEVLSGLFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=368075 FHG12_RS08400 WP_139515305.1 2061350..2062735(+) (radA) [Hymenobacter jejuensis strain 17J68-5]
ATGGCCAAACTTAAGACTCTCTATTTCTGTCAAAACTGCGGGGCACAATCGGCCAAATGGATCGGCCGCTGCCCTTCCTG
CGGCGAGTGGAATACCTACGTGGAGGAAGTAGTACAGAAGGAAAATACGCAGGCCACGGGCTCCTGGAAGCCGCCTACCT
CTTCGCCCGGCACCAAAACAGTGGCCAAGCCCCGGGCCATCGGCGAAATCCATTTTGAAGAAGAAGCCCGCATCAATACC
CAGGATGCCGAGCTCAACCGCGTGTTGGGCGGGGGCTTAGTGCTTGGCTCTCTGGTGCTTATCGGTGGCGAACCCGGCAT
AGGCAAAAGCACGCTAATGCTCCAGATTGCCATGAACCTGCGCCAACTGAAGGTGCTATATGTATCGGGTGAGGAAAGCG
AGCAGCAGATCAAGATGCGCGCCGAACGCCTGGGTCCGCAACACCCTGATTGTTATATACTTACCGAAACTAATACCCAG
AACATTTTCAAGCAGATCGATCAGCTTCAGCCCAACGTAGTCGTGATCGACTCGATCCAGACGCTGCATTCGGGGTTGGT
GGAGTCGGGGGCGGGCTCGGTGTCGCAGGTGCGCGAATGCACCGCTGAGTTGCTTAAGTATGCCAAGGAAACGGGCGTGC
CGGTGCTCATCATCGGTCACATCACGAAGGACGGCTCCATTGCCGGCCCCAAAATCCTGGAGCACATGGTCGATACGGTG
TTGCAGTTCGAGGGCGACCGCCACTTGAGCTACCGCATCCTGCGTACCACCAAAAACCGCTTTGGCTCGACCTCCGAACT
GGGCATCTACGAAATGCAAGGCACGGGCCTGCGGCAAGTATCCAATCCCTCGGAAATCCTGCTCTCGCAACGCACTGATA
ATCTGAGTGGTATGGCGATCGGCGCTACGCTCGAAGGCAACCGCCCGCTGCTTGTGGAAGTACAGGCCCTCGTGACGCCC
GCCACCTATGGCACGCCCCAGCGCAGCAGTACGGGCTTCGACGCCAAACGCCTGAACATGCTGCTGGCGGTGCTCGAAAA
GCGCTCGGGGTTGCGCTTGGGTCAGCACGACGTGTTCCTGAACATTGCCGGCGGCCTGCGCCTCGACGACCCGGCGCTCG
ACGTAGCCGTGTGCGCTGCGGTGGTATCGTCGCTTAATGATATCCCGATTCCGGGCGAAGTCTGTCTGGCTTCCGAAGTC
GGGTTGAGCGGAGAAATTCGGGCGGTGAGCCGCCTGGACCAGCGGTTGTCGGAAGCCGAAAAACTGGGGTTTCAAGAGAT
GTACATTTCCCAGTTCAACGCCAAAGGATTGGACTTAGGCCGGTACGGCATTCGGGTACACCCAGTGGGACGATTAGACG
AAGTTTTGAGCGGCTTATTTGGCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(364-457)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.404

100

0.516
  radA Streptococcus pneumoniae Rx1

50.649

100

0.508
  radA Streptococcus pneumoniae D39

50.649

100

0.508
  radA Streptococcus pneumoniae R6

50.649

100

0.508
  radA Streptococcus pneumoniae TIGR4

50.649

100

0.508
  radA Streptococcus mitis NCTC 12261

50.433

100

0.505
  radA Streptococcus mitis SK321

50.433

100

0.505

Multiple sequence alignment