Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FHN83_RS09020 Genome accession   NZ_CP040889
Coordinates   1524079..1525512 (+) Length   477 a.a.
NCBI ID   WP_039031627.1    Uniprot ID   -
Organism   Leclercia adecarboxylata strain Z96-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1519079..1530512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHN83_RS08990 (FHN83_08990) - 1519646..1520623 (+) 978 WP_039031632.1 calcium/sodium antiporter -
  FHN83_RS08995 (FHN83_08995) kdsD 1520637..1521623 (+) 987 WP_039031631.1 arabinose-5-phosphate isomerase KdsD -
  FHN83_RS09000 (FHN83_09000) kdsC 1521638..1522204 (+) 567 WP_039031836.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  FHN83_RS09005 (FHN83_09005) lptC 1522201..1522776 (+) 576 WP_039031630.1 LPS export ABC transporter periplasmic protein LptC -
  FHN83_RS09010 (FHN83_09010) lptA 1522745..1523299 (+) 555 WP_039031629.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  FHN83_RS09015 (FHN83_09015) lptB 1523306..1524031 (+) 726 WP_039031628.1 LPS export ABC transporter ATP-binding protein -
  FHN83_RS09020 (FHN83_09020) rpoN/rpoN1 1524079..1525512 (+) 1434 WP_039031627.1 RNA polymerase factor sigma-54 Machinery gene
  FHN83_RS09025 (FHN83_09025) hpf 1525535..1525822 (+) 288 WP_039031626.1 ribosome hibernation promoting factor -
  FHN83_RS09030 (FHN83_09030) ptsN 1525905..1526396 (+) 492 WP_039031625.1 PTS IIA-like nitrogen regulatory protein PtsN -
  FHN83_RS09035 (FHN83_09035) rapZ 1526442..1527296 (+) 855 WP_039031624.1 RNase adapter RapZ -
  FHN83_RS09040 (FHN83_09040) npr 1527293..1527565 (+) 273 WP_032614489.1 PTS phosphocarrier protein NPr -
  FHN83_RS09045 (FHN83_09045) mtgA 1527562..1528287 (-) 726 WP_139563704.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  FHN83_RS09050 (FHN83_09050) elbB 1528284..1528937 (-) 654 WP_139563705.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54204.02 Da        Isoelectric Point: 4.3180

>NTDB_id=368060 FHN83_RS09020 WP_039031627.1 1524079..1525512(+) (rpoN/rpoN1) [Leclercia adecarboxylata strain Z96-1]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVETQQTQDNETLDTVDALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDETGYLTVSLDD
ILESIGDDDIEIEEVEAVLKRVQRFDPIGVAARDLRDCLLIQLSQFVKETPWLEEARLIISEHLDLLANHDFRSLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGLWTVELNSDSIPRLQINQQYASMCTSSRNDSDNQFIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=368060 FHN83_RS09020 WP_039031627.1 1524079..1525512(+) (rpoN/rpoN1) [Leclercia adecarboxylata strain Z96-1]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAGCTGGCCATGACGCCGCAGTTACAACAGGCCATTCGTCTGTTGCA
GCTGTCGACGCTGGAACTTCAGCAGGAGCTCCAGCAAGCGCTGGACAGTAACCCCCTCCTCGAGCAAACCGATCTTCACG
ACGAGGTAGAAACTCAGCAAACCCAGGATAACGAAACCCTCGACACGGTTGATGCGTTAGAGCAGAAAGAGATGCCTGAC
GAACTCCCGCTCGATGCCAGCTGGGATGAGATCTACACCGCCGGAACCCCATCCGGCACGCGGGCAGACTATCAGGATGA
CGAGTTACCGGTGTATCAGGGTGAAACCACCCAGTCGCTGCAGGATTACCTGATGTGGCAGGTGGAGCTGACGCCGTTTT
CCGATACCGATCGTGCCATCGCCACCTCCATTGTGGATGCCGTCGATGAGACCGGCTATTTGACCGTGTCGCTGGACGAT
ATCCTGGAGAGCATCGGCGACGATGATATTGAGATTGAAGAGGTCGAAGCGGTTCTGAAACGCGTGCAGCGTTTTGACCC
GATCGGCGTCGCCGCGCGCGATTTGCGCGATTGTCTGCTGATTCAGCTTTCGCAGTTTGTGAAAGAGACCCCGTGGCTGG
AAGAGGCCCGGCTTATCATCAGCGAACATCTGGATCTGCTGGCCAACCACGACTTCCGTTCACTGATGCGTGTGACGCGA
CTGAAAGAAGAGGTGCTGAAAGAAGCGGTCAATCTGATTCAGTCGCTGGATCCGCGCCCGGGGCAGTCCATCCAGACCAG
CGAGCCCGAGTATGTCATTCCTGATGTGCTGGTGCGTAAGCATAACGGTCTGTGGACCGTGGAGCTGAATTCCGACAGCA
TCCCCCGCCTGCAAATTAATCAGCAGTACGCCTCAATGTGCACCAGCTCCCGCAACGACTCGGATAACCAGTTTATCCGC
AGCAATCTGCAGGAGGCACGCTGGCTGATCAAAAGCCTGGAGAGCCGCAATGATACCCTGCTGCGCGTCAGCCGCTGCAT
CGTCGAGCAGCAGCAGGCGTTTTTTGAGCAGGGTGAAGAGTTTATGAAGCCGATGGTGCTGGCCGATATTGCCCAGGCCG
TCGAGATGCACGAATCGACAATTTCACGCGTGACGACGCAGAAGTATCTTCACAGCCCGCGCGGTATTTTTGAGCTTAAG
TATTTTTTCTCCAGCCATGTCAACACCGAAGGCGGCGGCGAAGCCTCGTCGACGGCGATCCGGGCGCTGGTGAAAAAGTT
AATCGCCGCGGAAAACCCCGCGAAACCACTGAGTGACAGTAAGTTGACCACCATGCTGTCCGAACAAGGTATCATGGTGG
CACGCCGCACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCAAACCAGCGTAAACAACTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.136

100

0.486

Multiple sequence alignment