Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GZS12_RS17515 Genome accession   NZ_CP048337
Coordinates   3676287..3676892 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 142     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3671287..3681892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZS12_RS17495 (GZS12_17495) aes 3671428..3672387 (+) 960 WP_001357009.1 acetyl esterase -
  GZS12_RS17500 (GZS12_17500) hemH 3672384..3673346 (-) 963 WP_001250117.1 ferrochelatase -
  GZS12_RS17505 (GZS12_17505) adk 3673478..3674122 (-) 645 WP_001220233.1 adenylate kinase -
  GZS12_RS17510 (GZS12_17510) htpG 3674303..3676177 (-) 1875 WP_022645285.1 molecular chaperone HtpG -
  GZS12_RS17515 (GZS12_17515) recR 3676287..3676892 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  GZS12_RS17520 (GZS12_17520) ybaB 3676892..3677221 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  GZS12_RS17525 (GZS12_17525) dnaX 3677274..3679205 (-) 1932 WP_022645284.1 DNA polymerase III subunit gamma/tau -
  GZS12_RS17530 (GZS12_17530) apt 3679334..3679885 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  GZS12_RS17535 (GZS12_17535) ybaN 3680038..3680415 (-) 378 WP_022645283.1 DUF454 family protein -
  GZS12_RS17540 (GZS12_17540) priC 3680485..3681012 (+) 528 WP_022645282.1 primosomal replication protein N'' -
  GZS12_RS17545 (GZS12_17545) rsmS 3681026..3681190 (+) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=368046 GZS12_RS17515 WP_001195025.1 3676287..3676892(-) (recR) [Escherichia coli strain 142]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=368046 GZS12_RS17515 WP_001195025.1 3676287..3676892(-) (recR) [Escherichia coli strain 142]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCGCCGCTGGACGGCATCGGTCCGGATGACATCGGCCTTGATCGCCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACATTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443