Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GZS12_RS09050 Genome accession   NZ_CP048337
Coordinates   1940414..1941841 (-) Length   475 a.a.
NCBI ID   WP_000980581.1    Uniprot ID   -
Organism   Escherichia coli strain 142     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1935414..1946841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZS12_RS09020 (GZS12_09020) yeeZ 1935469..1936293 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  GZS12_RS09025 (GZS12_09025) yeeY 1936339..1937268 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  GZS12_RS09030 (GZS12_09030) yoeI 1937483..1937545 (+) 63 WP_010723108.1 membrane protein YoeI -
  GZS12_RS09035 (GZS12_09035) plaP 1937535..1938893 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GZS12_RS09040 (GZS12_09040) tsuA 1939072..1940130 (+) 1059 WP_023910197.1 thiosulfate utilization transporter TsuA/YeeE -
  GZS12_RS09045 (GZS12_09045) tsuB 1940144..1940371 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GZS12_RS09050 (GZS12_09050) sbcB 1940414..1941841 (-) 1428 WP_000980581.1 exodeoxyribonuclease I Machinery gene
  GZS12_RS09055 (GZS12_09055) dacD 1942050..1943216 (+) 1167 WP_001563931.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GZS12_RS09060 (GZS12_09060) sbmC 1943335..1943808 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  GZS12_RS09065 (GZS12_09065) yeeA 1944006..1945064 (+) 1059 WP_001200891.1 FUSC family protein -
  GZS12_RS09070 (GZS12_09070) tmaR 1945236..1945565 (+) 330 WP_000450409.1 DUF496 family protein -
  GZS12_RS09075 (GZS12_09075) - 1945666..1945848 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  GZS12_RS09080 (GZS12_09080) - 1945920..1946048 (+) 129 Protein_1798 transposase domain-containing protein -
  GZS12_RS09085 (GZS12_09085) - 1946337..1946417 (-) 81 Protein_1799 hypothetical protein -
  GZS12_RS09090 (GZS12_09090) yeeW 1946463..1946657 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6070

>NTDB_id=368025 GZS12_RS09050 WP_000980581.1 1940414..1941841(-) (sbcB) [Escherichia coli strain 142]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=368025 GZS12_RS09050 WP_000980581.1 1940414..1941841(-) (sbcB) [Escherichia coli strain 142]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579