Detailed information NTG0368012

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GZS12_RS05640
• Genome accession: NZ_CP048337
• Coordinates: 1189753..1190745 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 142
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1184753..1195745

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GZS12_RS05610 (GZS12_05610)	ispD	1184814..1185524 (+)	711	WP_000246131.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GZS12_RS05615 (GZS12_05615)	ispF	1185524..1186003 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GZS12_RS05620 (GZS12_05620)	truD	1186000..1187049 (+)	1050	WP_022646031.1	tRNA pseudouridine(13) synthase TruD	-
GZS12_RS05625 (GZS12_05625)	surE	1187030..1187791 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GZS12_RS05630 (GZS12_05630)	pcm	1187785..1188411 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GZS12_RS05635 (GZS12_05635)	nlpD	1188596..1189690 (+)	1095	WP_306305266.1	murein hydrolase activator NlpD	-
GZS12_RS05640 (GZS12_05640)	rpoS	1189753..1190745 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GZS12_RS05645 (GZS12_05645)	-	1190866..1191273 (-)	408	WP_001208067.1	MarR family transcriptional regulator	-
GZS12_RS05650 (GZS12_05650)	-	1191420..1192014 (+)	595	Protein_1127	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
GZS12_RS05655 (GZS12_05655)	-	1192014..1193441 (+)	1428	WP_000863202.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
GZS12_RS05660 (GZS12_05660)	-	1193452..1193688 (+)	237	WP_000562980.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
GZS12_RS05665 (GZS12_05665)	pphB	1193729..1194385 (-)	657	WP_022646027.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=368012 GZS12_RS05640 WP_000081550.1 1189753..1190745(+) (rpoS) [Escherichia coli strain 142]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=368012 GZS12_RS05640 WP_000081550.1 1189753..1190745(+) (rpoS) [Escherichia coli strain 142]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCTTTGCTGGATCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715