Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FG381_RS07490 Genome accession   NZ_CP040882
Coordinates   1816728..1817675 (+) Length   315 a.a.
NCBI ID   WP_139688239.1    Uniprot ID   -
Organism   Sutterella faecalis strain KGMB03119     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1811728..1822675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FG381_RS07475 (FG381_07475) - 1813382..1815505 (+) 2124 WP_139688237.1 hypothetical protein -
  FG381_RS07480 (FG381_07480) coaD 1815521..1816003 (-) 483 WP_139688238.1 pantetheine-phosphate adenylyltransferase -
  FG381_RS07485 (FG381_07485) - 1816000..1816713 (-) 714 WP_226960273.1 RsmD family RNA methyltransferase -
  FG381_RS07490 (FG381_07490) pilA 1816728..1817675 (+) 948 WP_139688239.1 signal recognition particle-docking protein FtsY Machinery gene
  FG381_RS07495 (FG381_07495) - 1817713..1819176 (+) 1464 WP_139688240.1 Ppx/GppA phosphatase family protein -
  FG381_RS07500 (FG381_07500) - 1819187..1819861 (+) 675 WP_139688241.1 cell division ATP-binding protein FtsE -
  FG381_RS07505 (FG381_07505) - 1819858..1820757 (+) 900 WP_139688242.1 ABC transporter permease -
  FG381_RS07510 (FG381_07510) rpoH 1820851..1821885 (+) 1035 WP_139688243.1 RNA polymerase sigma factor RpoH -
  FG381_RS07515 (FG381_07515) trmL 1821912..1822382 (+) 471 WP_139688244.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 33765.41 Da        Isoelectric Point: 5.0106

>NTDB_id=367983 FG381_RS07490 WP_139688239.1 1816728..1817675(+) (pilA) [Sutterella faecalis strain KGMB03119]
MGFGSSEGWLSRLKRGLSRTRVNIVGLFSGGVVDDDFLEELEYALISADVGVETSTRILERLRDDIKLKGLKTQDEVRRA
LRDELERILAPAEGTLNTDQAKPCVIMMCGVNGAGKTTSIGKLAKRFADDGKSVLLAAGDTFRAAAREQLAVWGERNRVE
VISQTGGDPAAVVFDAVSAGRARGMDVVIADTAGRLPTQTNLMEELSRIRRSQEKAMEGAPHEVILVVDGTNGQNALAQV
RAFDLYAHLTGLIVTKLDGTAKGGVLAAITAMRGDKPLPIYYIGVGEKLEDLQPFNAHEFASALVGLDPQDESGS

Nucleotide


Download         Length: 948 bp        

>NTDB_id=367983 FG381_RS07490 WP_139688239.1 1816728..1817675(+) (pilA) [Sutterella faecalis strain KGMB03119]
ATGGGTTTTGGTTCTTCTGAAGGCTGGCTTTCCCGCCTGAAACGCGGCCTTTCGCGCACGCGCGTCAACATCGTCGGACT
ATTTTCCGGAGGCGTCGTTGACGACGACTTTCTCGAGGAACTCGAATACGCTCTGATCTCTGCCGATGTCGGCGTAGAGA
CCTCCACGCGTATCTTAGAGCGCCTTCGCGATGACATTAAGCTCAAGGGCCTCAAGACCCAGGATGAAGTCCGTCGGGCG
CTGCGCGACGAACTCGAAAGAATACTTGCCCCGGCAGAAGGCACGCTCAACACCGATCAGGCCAAACCCTGCGTCATCAT
GATGTGCGGCGTCAACGGCGCCGGCAAAACCACATCCATCGGCAAGCTTGCCAAGCGCTTTGCCGATGACGGCAAGAGCG
TGCTGCTCGCGGCCGGCGACACTTTCCGTGCAGCCGCCCGGGAGCAGCTTGCCGTCTGGGGTGAACGCAACCGCGTGGAG
GTCATCTCGCAGACCGGCGGCGATCCTGCCGCCGTCGTCTTTGATGCCGTTTCCGCCGGGCGTGCCCGCGGCATGGATGT
TGTTATTGCCGACACCGCCGGAAGACTCCCCACGCAGACCAACCTGATGGAAGAGCTCAGCCGCATCCGCCGCTCCCAGG
AAAAGGCCATGGAAGGGGCTCCCCACGAGGTCATCCTCGTCGTGGACGGCACCAACGGCCAGAACGCGCTCGCACAGGTT
CGTGCATTTGATCTCTACGCGCATCTCACCGGTCTTATCGTTACGAAGCTTGACGGCACGGCCAAGGGCGGCGTTCTTGC
TGCCATTACAGCCATGCGCGGCGACAAACCCCTGCCGATTTACTACATCGGCGTGGGAGAAAAACTCGAGGATCTGCAGC
CCTTCAATGCACATGAATTCGCAAGCGCATTGGTCGGCCTCGATCCCCAGGACGAAAGCGGCAGCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(104-305)

SRP54-type protein, helical bundle domain (SRP54_N)

(26-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

56.766

96.19

0.546

Multiple sequence alignment