Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GZS13_RS08625 Genome accession   NZ_CP048330
Coordinates   1803671..1805098 (-) Length   475 a.a.
NCBI ID   WP_000980603.1    Uniprot ID   -
Organism   Escherichia coli strain 10     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1798671..1810098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZS13_RS08595 (GZS13_08595) yeeZ 1798726..1799550 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  GZS13_RS08600 (GZS13_08600) yeeY 1799596..1800525 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  GZS13_RS08605 (GZS13_08605) yoeI 1800740..1800802 (+) 63 WP_010723108.1 membrane protein YoeI -
  GZS13_RS08610 (GZS13_08610) plaP 1800792..1802150 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GZS13_RS08615 (GZS13_08615) tsuA 1802329..1803387 (+) 1059 WP_000492321.1 thiosulfate utilization transporter TsuA/YeeE -
  GZS13_RS08620 (GZS13_08620) tsuB 1803401..1803628 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GZS13_RS08625 (GZS13_08625) sbcB 1803671..1805098 (-) 1428 WP_000980603.1 exodeoxyribonuclease I Machinery gene
  GZS13_RS08630 (GZS13_08630) dacD 1805307..1806473 (+) 1167 WP_001741928.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GZS13_RS08635 (GZS13_08635) sbmC 1806592..1807065 (+) 474 WP_001105407.1 DNA gyrase inhibitor SbmC -
  GZS13_RS08640 (GZS13_08640) yeeA 1807263..1808321 (+) 1059 WP_001200895.1 FUSC family protein -
  GZS13_RS08645 (GZS13_08645) tmaR 1808493..1808822 (+) 330 WP_000450409.1 DUF496 family protein -
  GZS13_RS25510 - 1808923..1809288 (-) 366 WP_001280454.1 EutP/PduV family microcompartment system protein -
  GZS13_RS25210 - 1809559..1809948 (-) 390 WP_001445118.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4720

>NTDB_id=367946 GZS13_RS08625 WP_000980603.1 1803671..1805098(-) (sbcB) [Escherichia coli strain 10]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=367946 GZS13_RS08625 WP_000980603.1 1803671..1805098(-) (sbcB) [Escherichia coli strain 10]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCATCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment