Detailed information NTG0367933

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GZS13_RS05045
• Genome accession: NZ_CP048330
• Coordinates: 1040769..1041761 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 10
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1035769..1046761

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GZS13_RS05015 (GZS13_05015)	ispD	1035830..1036540 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GZS13_RS05020 (GZS13_05020)	ispF	1036540..1037019 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GZS13_RS05025 (GZS13_05025)	truD	1037016..1038065 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
GZS13_RS05030 (GZS13_05030)	surE	1038046..1038807 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GZS13_RS05035 (GZS13_05035)	pcm	1038801..1039427 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GZS13_RS05040 (GZS13_05040)	nlpD	1039612..1040706 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
GZS13_RS05045 (GZS13_05045)	rpoS	1040769..1041761 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GZS13_RS05050 (GZS13_05050)	ygbN	1041855..1043219 (-)	1365	WP_000104441.1	GntP family transporter	-
GZS13_RS05055 (GZS13_05055)	ygbM	1043308..1044084 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
GZS13_RS05060 (GZS13_05060)	ygbL	1044089..1044727 (-)	639	WP_001278994.1	aldolase	-
GZS13_RS05065 (GZS13_05065)	otnK	1044724..1045986 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=367933 GZS13_RS05045 WP_000081550.1 1040769..1041761(+) (rpoS) [Escherichia coli strain 10]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=367933 GZS13_RS05045 WP_000081550.1 1040769..1041761(+) (rpoS) [Escherichia coli strain 10]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGCGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715