Detailed information NTG0367889

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GZS14_RS17450
• Genome accession: NZ_CP048326
• Coordinates: 3611108..3612100 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 61
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3606108..3617100

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GZS14_RS17425 (GZS14_17435)	ygbN	3606763..3608127 (+)	1365	WP_000104439.1	GntP family transporter	-
GZS14_RS17430 (GZS14_17440)	-	3608166..3608402 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
GZS14_RS17435 (GZS14_17445)	-	3608413..3609840 (-)	1428	WP_074502488.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
GZS14_RS17440 (GZS14_17450)	-	3609840..3610433 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
GZS14_RS17445 (GZS14_17455)	-	3610580..3610987 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
GZS14_RS17450 (GZS14_17460)	rpoS	3611108..3612100 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GZS14_RS17455 (GZS14_17465)	nlpD	3612163..3613257 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
GZS14_RS17460 (GZS14_17470)	pcm	3613442..3614068 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GZS14_RS17465 (GZS14_17475)	surE	3614062..3614823 (-)	762	WP_001349984.1	5'/3'-nucleotidase SurE	-
GZS14_RS17470 (GZS14_17480)	truD	3614804..3615853 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
GZS14_RS17475 (GZS14_17485)	ispF	3615850..3616329 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GZS14_RS17480 (GZS14_17490)	ispD	3616329..3617039 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=367889 GZS14_RS17450 WP_000081550.1 3611108..3612100(-) (rpoS) [Escherichia coli strain 61]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=367889 GZS14_RS17450 WP_000081550.1 3611108..3612100(-) (rpoS) [Escherichia coli strain 61]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715