Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FHP15_RS15455 Genome accession   NZ_CP040880
Coordinates   2704306..2704587 (-) Length   93 a.a.
NCBI ID   WP_000843021.1    Uniprot ID   A0A5M9H3J2
Organism   Bacillus paranthracis strain F3351/87     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2699306..2709587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHP15_RS15410 (FHP15_15320) - 2699728..2700456 (-) 729 WP_001099496.1 hypothetical protein -
  FHP15_RS15415 (FHP15_15325) - 2700671..2701231 (-) 561 WP_000873661.1 recombinase family protein -
  FHP15_RS15420 - 2701434..2701589 (-) 156 WP_002163132.1 hypothetical protein -
  FHP15_RS15425 (FHP15_15330) - 2701912..2702301 (-) 390 WP_000196743.1 hypothetical protein -
  FHP15_RS15430 (FHP15_15335) - 2702558..2702884 (-) 327 WP_000622512.1 hypothetical protein -
  FHP15_RS15435 (FHP15_15340) - 2702874..2703056 (-) 183 WP_000121151.1 DUF6877 family protein -
  FHP15_RS15440 (FHP15_15345) - 2703180..2703908 (+) 729 WP_000172501.1 hypothetical protein -
  FHP15_RS15445 - 2703913..2704080 (-) 168 WP_080021268.1 hypothetical protein -
  FHP15_RS15450 (FHP15_15350) - 2704107..2704304 (-) 198 WP_001065606.1 hypothetical protein -
  FHP15_RS15455 (FHP15_15355) abrB 2704306..2704587 (-) 282 WP_000843021.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FHP15_RS15460 (FHP15_15360) - 2704714..2704860 (-) 147 WP_000800313.1 BC1881 family protein -
  FHP15_RS15465 (FHP15_15365) - 2704863..2705792 (-) 930 WP_000026877.1 hypothetical protein -
  FHP15_RS15470 (FHP15_15370) - 2705809..2706126 (-) 318 WP_000805618.1 transglycosylase -
  FHP15_RS15475 (FHP15_15375) - 2706270..2706485 (+) 216 WP_001139245.1 spore germination protein -
  FHP15_RS15480 (FHP15_15380) - 2708237..2709019 (-) 783 WP_000135264.1 helix-turn-helix domain-containing protein -
  FHP15_RS15485 (FHP15_15385) - 2709035..2709574 (-) 540 WP_001028235.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10215.83 Da        Isoelectric Point: 4.8227

>NTDB_id=367877 FHP15_RS15455 WP_000843021.1 2704306..2704587(-) (abrB) [Bacillus paranthracis strain F3351/87]
MKSTGIIRNIDPLGRIVVPMELRRTLGIQEKDPMEIFVDGESIILKKYNVNGSCQITGEVSDQNIELAGGKLVLSPEGID
QVLAEIESHLKGR

Nucleotide


Download         Length: 282 bp        

>NTDB_id=367877 FHP15_RS15455 WP_000843021.1 2704306..2704587(-) (abrB) [Bacillus paranthracis strain F3351/87]
ATGAAATCAACAGGTATTATTCGTAACATTGATCCCTTAGGACGTATTGTGGTTCCAATGGAATTACGTCGTACATTAGG
TATTCAGGAAAAGGATCCAATGGAGATTTTCGTAGATGGTGAATCTATTATTCTAAAAAAATATAATGTTAACGGTTCTT
GCCAAATTACAGGCGAAGTTTCTGACCAAAATATCGAATTAGCTGGTGGGAAACTCGTACTGAGTCCTGAGGGAATCGAC
CAAGTTTTAGCGGAAATCGAATCACATTTGAAGGGGCGATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(14-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5M9H3J2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

65.934

97.849

0.645

Multiple sequence alignment