Detailed information NTG0367807

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GZS15_RS17455
• Genome accession: NZ_CP048322
• Coordinates: 3611993..3612985 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 64
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3606993..3617985

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GZS15_RS17430 (GZS15_17435)	ygbN	3607648..3609012 (+)	1365	WP_000104439.1	GntP family transporter	-
GZS15_RS17435 (GZS15_17440)	-	3609051..3609287 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
GZS15_RS17440 (GZS15_17445)	-	3609298..3610725 (-)	1428	WP_074502488.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
GZS15_RS17445 (GZS15_17450)	-	3610725..3611318 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
GZS15_RS17450 (GZS15_17455)	-	3611465..3611872 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
GZS15_RS17455 (GZS15_17460)	rpoS	3611993..3612985 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GZS15_RS17460 (GZS15_17465)	nlpD	3613048..3614142 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
GZS15_RS17465 (GZS15_17470)	pcm	3614327..3614953 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GZS15_RS17470 (GZS15_17475)	surE	3614947..3615708 (-)	762	WP_001349984.1	5'/3'-nucleotidase SurE	-
GZS15_RS17475 (GZS15_17480)	truD	3615689..3616738 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
GZS15_RS17480 (GZS15_17485)	ispF	3616735..3617214 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GZS15_RS17485 (GZS15_17490)	ispD	3617214..3617924 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=367807 GZS15_RS17455 WP_000081550.1 3611993..3612985(-) (rpoS) [Escherichia coli strain 64]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=367807 GZS15_RS17455 WP_000081550.1 3611993..3612985(-) (rpoS) [Escherichia coli strain 64]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715