Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GZS15_RS14005 Genome accession   NZ_CP048322
Coordinates   2871969..2873396 (+) Length   475 a.a.
NCBI ID   WP_000980567.1    Uniprot ID   -
Organism   Escherichia coli strain 64     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2866969..2878396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZS15_RS13985 (GZS15_13990) - 2867929..2868480 (-) 552 Protein_2776 FUSC family protein -
  GZS15_RS13990 (GZS15_13995) sbmC 2868678..2869151 (-) 474 WP_001105408.1 DNA gyrase inhibitor SbmC -
  GZS15_RS13995 (GZS15_14000) - 2869208..2870428 (-) 1221 WP_000343760.1 ISL3-like element ISKox3 family transposase -
  GZS15_RS14000 (GZS15_14005) dacD 2870594..2871760 (-) 1167 WP_078405711.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GZS15_RS14005 (GZS15_14010) sbcB 2871969..2873396 (+) 1428 WP_000980567.1 exodeoxyribonuclease I Machinery gene
  GZS15_RS14010 (GZS15_14015) tsuB 2873439..2873666 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GZS15_RS14015 (GZS15_14020) tsuA 2873680..2874738 (-) 1059 WP_000492321.1 thiosulfate utilization transporter TsuA/YeeE -
  GZS15_RS14020 (GZS15_14025) plaP 2874917..2876275 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GZS15_RS14025 (GZS15_14030) yoeI 2876265..2876327 (-) 63 WP_010723108.1 membrane protein YoeI -
  GZS15_RS14030 (GZS15_14035) yeeY 2876542..2877471 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  GZS15_RS14035 (GZS15_14040) yeeZ 2877517..2878341 (-) 825 WP_000754749.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54503.77 Da        Isoelectric Point: 5.4720

>NTDB_id=367794 GZS15_RS14005 WP_000980567.1 2871969..2873396(+) (sbcB) [Escherichia coli strain 64]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQIFTSEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=367794 GZS15_RS14005 WP_000980567.1 2871969..2873396(+) (sbcB) [Escherichia coli strain 64]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAACAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGATCTTCACGTCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581