Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GZS16_RS08840 Genome accession   NZ_CP048310
Coordinates   1884696..1886123 (-) Length   475 a.a.
NCBI ID   WP_000980603.1    Uniprot ID   -
Organism   Escherichia coli strain 32-4     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1879696..1891123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZS16_RS08810 (GZS16_08810) yeeZ 1879751..1880575 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  GZS16_RS08815 (GZS16_08815) yeeY 1880621..1881550 (+) 930 Protein_1747 LysR substrate-binding domain-containing protein -
  GZS16_RS08820 (GZS16_08820) yoeI 1881765..1881827 (+) 63 WP_010723108.1 membrane protein YoeI -
  GZS16_RS08825 (GZS16_08825) plaP 1881817..1883175 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GZS16_RS08830 (GZS16_08830) tsuA 1883354..1884412 (+) 1059 WP_000492321.1 thiosulfate utilization transporter TsuA/YeeE -
  GZS16_RS08835 (GZS16_08835) tsuB 1884426..1884653 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GZS16_RS08840 (GZS16_08840) sbcB 1884696..1886123 (-) 1428 WP_000980603.1 exodeoxyribonuclease I Machinery gene
  GZS16_RS08845 (GZS16_08845) dacD 1886332..1887498 (+) 1167 WP_047149268.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GZS16_RS08850 (GZS16_08850) - 1887625..1888845 (-) 1221 WP_000343760.1 ISL3-like element ISKox3 family transposase -
  GZS16_RS08855 (GZS16_08855) sbmC 1888941..1889414 (+) 474 WP_001105407.1 DNA gyrase inhibitor SbmC -
  GZS16_RS08860 (GZS16_08860) yeeA 1889612..1890670 (+) 1059 WP_001200895.1 FUSC family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4720

>NTDB_id=367702 GZS16_RS08840 WP_000980603.1 1884696..1886123(-) (sbcB) [Escherichia coli strain 32-4]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=367702 GZS16_RS08840 WP_000980603.1 1884696..1886123(-) (sbcB) [Escherichia coli strain 32-4]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTAATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581