Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GZS16_RS05675 Genome accession   NZ_CP048310
Coordinates   1179239..1179754 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 32-4     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1174239..1184754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZS16_RS05630 (GZS16_05630) csrA 1174992..1175177 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  GZS16_RS05660 (GZS16_05660) yqaB 1176469..1177035 (+) 567 WP_162676362.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  GZS16_RS05665 (GZS16_05665) yqaA 1177032..1177460 (+) 429 WP_001287454.1 YqaA family protein -
  GZS16_RS05670 (GZS16_05670) gshA 1177533..1179089 (+) 1557 WP_001521120.1 glutamate--cysteine ligase -
  GZS16_RS05675 (GZS16_05675) luxS 1179239..1179754 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  GZS16_RS05680 (GZS16_05680) emrB 1179818..1181356 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  GZS16_RS05685 (GZS16_05685) emrA 1181373..1182545 (-) 1173 WP_020233875.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  GZS16_RS05690 (GZS16_05690) emrR 1182672..1183202 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  GZS16_RS05700 (GZS16_05700) ygaH 1183293..1183628 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  GZS16_RS05705 (GZS16_05705) ygaZ 1183618..1184355 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=367692 GZS16_RS05675 WP_001130211.1 1179239..1179754(+) (luxS) [Escherichia coli strain 32-4]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=367692 GZS16_RS05675 WP_001130211.1 1179239..1179754(+) (luxS) [Escherichia coli strain 32-4]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731