Detailed information NTG0367689

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GZS16_RS05365
• Genome accession: NZ_CP048310
• Coordinates: 1122479..1123471 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 32-4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1117479..1128471

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GZS16_RS05335 (GZS16_05335)	ispD	1117540..1118250 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GZS16_RS05340 (GZS16_05340)	ispF	1118250..1118729 (+)	480	WP_001521152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GZS16_RS05345 (GZS16_05345)	truD	1118726..1119775 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
GZS16_RS05350 (GZS16_05350)	surE	1119756..1120517 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GZS16_RS05355 (GZS16_05355)	pcm	1120511..1121137 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GZS16_RS05360 (GZS16_05360)	nlpD	1121322..1122416 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
GZS16_RS05365 (GZS16_05365)	rpoS	1122479..1123471 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GZS16_RS05370 (GZS16_05370)	-	1123592..1123999 (-)	408	WP_001521151.1	MarR family transcriptional regulator	-
GZS16_RS05375 (GZS16_05375)	-	1124146..1124739 (+)	594	WP_001521150.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
GZS16_RS05380 (GZS16_05380)	-	1124739..1126166 (+)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
GZS16_RS05385 (GZS16_05385)	-	1126177..1126413 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
GZS16_RS05390 (GZS16_05390)	ygbN	1126452..1127816 (-)	1365	WP_000104455.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=367689 GZS16_RS05365 WP_000081550.1 1122479..1123471(+) (rpoS) [Escherichia coli strain 32-4]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=367689 GZS16_RS05365 WP_000081550.1 1122479..1123471(+) (rpoS) [Escherichia coli strain 32-4]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715