Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FEE40_RS11640 Genome accession   NZ_CP040852
Coordinates   2350437..2352245 (-) Length   602 a.a.
NCBI ID   WP_163587967.1    Uniprot ID   A0AAE6WIZ4
Organism   Ligilactobacillus murinus strain V10     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2345437..2357245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEE40_RS11615 (FEE40_11525) mgtE 2345816..2347183 (-) 1368 WP_004048221.1 magnesium transporter -
  FEE40_RS11620 (FEE40_11530) - 2347199..2348095 (-) 897 WP_056958140.1 RluA family pseudouridine synthase -
  FEE40_RS11625 (FEE40_11535) - 2348073..2348891 (-) 819 WP_004048223.1 NAD kinase -
  FEE40_RS11630 (FEE40_11540) - 2348928..2349557 (-) 630 WP_004048224.1 GTP pyrophosphokinase family protein -
  FEE40_RS11635 (FEE40_11545) - 2349762..2350391 (+) 630 WP_135056673.1 DsbA family protein -
  FEE40_RS11640 (FEE40_11550) pepF 2350437..2352245 (-) 1809 WP_163587967.1 oligoendopeptidase F Regulator
  FEE40_RS11645 (FEE40_11555) - 2352284..2353258 (-) 975 WP_163587968.1 competence protein CoiA family protein -
  FEE40_RS11650 (FEE40_11560) - 2353351..2354100 (-) 750 WP_004048228.1 adaptor protein MecA -
  FEE40_RS11655 (FEE40_11565) spxA 2354235..2354633 (-) 399 WP_004048229.1 transcriptional regulator SpxA -
  FEE40_RS11660 (FEE40_11570) nrdG 2354997..2355674 (-) 678 WP_163587557.1 anaerobic ribonucleoside-triphosphate reductase activating protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68405.21 Da        Isoelectric Point: 4.7640

>NTDB_id=367638 FEE40_RS11640 WP_163587967.1 2350437..2352245(-) (pepF) [Ligilactobacillus murinus strain V10]
MSEVTRLPKRSEVPLELTWDLTKIFATDAEFEEAFGQVVKAAEDFEQYKGTLENGAQAFLVALMAMLKLDRQLEVVYVYA
SMKNDEDTANAKYQALMARVQKLLADVSAKLAWFQPELLALAPEKLASYYQAEPRLNAYKILVNDWTRLRAHVLSEKEEA
LLAGASDILGASANVFEVLNNADLKFPVVTDGSGSKVELSNGVYGKLLEATERPVRREAFEQLYTVYKQFRHTFAATLSA
HVRKHNFSAKLRNYQSAKEASLAQNNIPVAVYDTLVKTVNENLELLHDYVALRKDILGVDELHMYDMYTPLTGEPTLTFT
YEQAKKMTLEALSVLGEEYTTYVEKAFAERWIDVVANAGKRSGAYSGGAYDTAPYILLNWQDTLDNLFTLVHEMGHTMHS
YYTRTNQPYQYGDYSIFVAEIASTTNENLLTQYLLETQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEAWIHEQDASQV
PLTADLMSDFYSKLNQRYYGDAVENDPEIAYEWSRIPHFYYNFYVYQYATGFGAASTLAERVLDEEPAHTEAYLNYLKAG
SSAAPLEVMKKAGVDMTDSQYLEKAFGIFKERLAELKELLAK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=367638 FEE40_RS11640 WP_163587967.1 2350437..2352245(-) (pepF) [Ligilactobacillus murinus strain V10]
ATGAGTGAAGTAACACGTCTACCAAAAAGATCAGAGGTGCCACTCGAGCTTACTTGGGATCTGACTAAGATCTTTGCGAC
TGATGCAGAATTTGAAGAAGCATTTGGGCAAGTTGTTAAAGCAGCTGAAGATTTTGAACAATACAAAGGAACATTAGAAA
ATGGGGCTCAAGCCTTTTTAGTTGCTCTAATGGCAATGCTTAAATTGGATCGTCAACTTGAAGTAGTTTATGTCTATGCA
AGCATGAAAAATGATGAGGATACTGCTAATGCTAAGTACCAAGCTTTAATGGCACGGGTCCAAAAGTTATTGGCTGATGT
TTCAGCTAAATTAGCTTGGTTTCAGCCTGAATTATTAGCTTTAGCACCAGAAAAATTAGCAAGCTATTATCAAGCTGAGC
CTAGATTGAATGCCTATAAAATATTAGTCAATGATTGGACTCGACTTCGCGCCCATGTCTTGAGTGAAAAAGAAGAAGCG
CTATTAGCAGGTGCAAGCGACATCTTAGGCGCTTCGGCTAATGTTTTTGAAGTTTTAAACAATGCTGATCTAAAATTTCC
CGTAGTAACTGATGGATCGGGTTCAAAAGTCGAGCTTTCAAATGGAGTCTACGGTAAATTGCTCGAAGCGACCGAGCGCC
CAGTTAGACGTGAAGCGTTCGAACAGTTATACACTGTATATAAGCAGTTCAGACATACGTTTGCGGCTACCCTGTCTGCG
CATGTACGTAAGCATAATTTTTCAGCTAAATTACGTAATTATCAAAGTGCCAAGGAAGCTTCACTAGCCCAAAATAATAT
TCCAGTAGCTGTTTATGATACTTTAGTTAAAACAGTCAATGAAAATTTGGAGCTACTGCATGATTATGTAGCTTTACGTA
AGGATATCTTAGGGGTCGATGAGTTGCATATGTATGATATGTATACTCCCTTGACGGGTGAGCCGACATTGACGTTTACT
TATGAGCAGGCTAAAAAGATGACCTTAGAAGCTTTGAGCGTCTTAGGCGAAGAATATACTACCTATGTAGAGAAGGCTTT
TGCTGAACGGTGGATCGATGTTGTTGCTAATGCAGGTAAGCGTTCGGGGGCCTATTCGGGTGGGGCCTATGATACTGCAC
CATATATTTTATTGAATTGGCAAGATACGCTAGATAATCTCTTTACATTAGTCCATGAGATGGGACACACGATGCACAGC
TACTATACACGGACTAATCAACCTTATCAATATGGGGATTATTCGATCTTTGTTGCTGAGATCGCATCAACGACAAACGA
AAACTTGTTGACCCAGTATTTGCTAGAGACCCAGACTGATCCTAAGGTACGGGCTTACGTATTGAATCACTATTTAGATG
GCTTTAAGGGAACCGTTTATCGGCAAACACAATTTGCTGAATTTGAAGCTTGGATCCATGAGCAAGATGCGTCACAAGTG
CCATTAACAGCAGATCTGATGTCAGATTTTTACAGTAAATTAAATCAACGCTACTATGGTGATGCAGTTGAAAATGACCC
AGAGATCGCATATGAATGGTCACGGATCCCGCATTTCTACTATAATTTCTATGTCTATCAATATGCAACTGGTTTTGGTG
CGGCCTCTACTTTAGCAGAGCGCGTCTTAGATGAAGAGCCTGCGCACACTGAAGCTTATTTGAACTACTTAAAAGCAGGT
AGTTCAGCGGCTCCATTAGAAGTAATGAAAAAAGCTGGTGTCGATATGACTGATAGTCAATATTTAGAGAAAGCTTTTGG
GATCTTTAAGGAACGTTTGGCTGAATTAAAAGAGCTATTAGCTAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.626

98.505

0.528

Multiple sequence alignment