Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FEE40_RS11530 Genome accession   NZ_CP040852
Coordinates   2327124..2328230 (-) Length   368 a.a.
NCBI ID   WP_135057520.1    Uniprot ID   A0AAE6WKA5
Organism   Ligilactobacillus murinus strain V10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2322124..2333230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEE40_RS11515 (FEE40_11425) - 2322405..2324429 (-) 2025 WP_163587501.1 KUP/HAK/KT family potassium transporter -
  FEE40_RS11520 (FEE40_11430) - 2324607..2325335 (+) 729 WP_004048177.1 deoxynucleoside kinase -
  FEE40_RS11525 (FEE40_11435) rny 2325395..2326936 (-) 1542 WP_286011505.1 ribonuclease Y -
  FEE40_RS11530 (FEE40_11440) recA 2327124..2328230 (-) 1107 WP_135057520.1 recombinase RecA Machinery gene
  FEE40_RS11535 (FEE40_11445) pgsA 2328448..2329035 (-) 588 WP_004048187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FEE40_RS11540 (FEE40_11450) - 2329143..2330072 (-) 930 WP_163587502.1 RodZ domain-containing protein -
  FEE40_RS11545 (FEE40_11455) - 2330112..2330840 (-) 729 WP_004048191.1 SDR family oxidoreductase -
  FEE40_RS11550 (FEE40_11460) - 2330837..2332144 (-) 1308 WP_163587503.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39474.18 Da        Isoelectric Point: 6.7625

>NTDB_id=367637 FEE40_RS11530 WP_135057520.1 2327124..2328230(-) (recA) [Ligilactobacillus murinus strain V10]
MADERQVALDKALKKIEKDFGKGAIMKMGEKADTQISTVPSGSLALDEALGVGGFPRGRIVEIYGPESSGKTTVALQAVA
EVQKQGGLAAYIDAENALDPAYATALGVNIDDLLLSQPGTGEEGLQIADALVSSGAVDIVVIDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKDGSDVLGNR
TRIKVVKNKVAPPFRTAEVDIMYGEGISKMGELIDLAVEKDIIEKSGSWFSYGGSHIGQGREKTKAYLSEHPEVADEITQ
KVRDTPTLTQKEKKALEKEKKAKEKEAAKADKKAANKPVSLDLGKDEK

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=367637 FEE40_RS11530 WP_135057520.1 2327124..2328230(-) (recA) [Ligilactobacillus murinus strain V10]
TTGGCTGACGAAAGACAAGTTGCTTTAGACAAAGCGCTCAAGAAGATCGAAAAAGATTTCGGTAAAGGTGCCATCATGAA
GATGGGTGAAAAGGCTGATACCCAGATCTCAACTGTTCCAAGTGGTTCATTGGCCCTTGATGAAGCTTTGGGAGTAGGTG
GTTTCCCAAGGGGACGTATCGTGGAGATCTATGGGCCTGAAAGTTCTGGTAAGACCACCGTTGCCTTGCAAGCGGTAGCT
GAAGTTCAAAAACAAGGCGGTCTAGCAGCCTATATCGATGCGGAAAATGCGCTTGATCCTGCATATGCGACAGCTTTGGG
CGTAAATATCGACGACTTGTTGCTCTCTCAACCCGGTACTGGTGAAGAAGGTCTACAGATCGCAGATGCCTTGGTCTCTT
CTGGTGCGGTAGATATCGTGGTCATTGACTCCGTAGCGGCTTTAGTTCCTAAAGCTGAGATCGAAGGTGAGATGGGCGAC
TCACATGTTGGTTTACAAGCGCGTTTGATGTCTCAAGCTTTGCGTAAACTTTCAGGTACGATCAACAAGACTAAGACGAT
CGCTTTGTTTATCAATCAGATCCGTGAAAAAGTTGGGGTGATGTTTGGTAATCCGGAAACGACCCCTGGTGGACGGGCCC
TTAAGTTTTACTCAACGATCCGCTTGGAAGTTCGGCGTGCTGAACAGATCAAGGATGGTTCCGATGTCTTAGGTAACCGG
ACTCGGATCAAAGTTGTGAAAAACAAGGTTGCACCACCATTTAGAACGGCAGAAGTTGATATCATGTATGGCGAAGGGAT
CTCGAAGATGGGTGAATTGATCGACTTAGCAGTTGAAAAAGATATCATCGAAAAGAGTGGTTCATGGTTCTCATATGGTG
GTAGTCATATTGGTCAAGGTCGTGAAAAGACAAAGGCTTACTTGAGTGAACATCCTGAAGTGGCCGACGAGATCACCCAA
AAAGTTCGTGATACACCAACGCTCACACAAAAAGAGAAAAAAGCACTTGAAAAAGAAAAAAAAGCTAAGGAAAAAGAAGC
GGCTAAAGCTGATAAAAAGGCAGCTAATAAGCCGGTCAGTTTAGACTTAGGCAAAGATGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

84.112

87.228

0.734
  recA Bacillus subtilis subsp. subtilis str. 168

76.852

88.043

0.677
  recA Streptococcus pneumoniae D39

64.932

99.185

0.644
  recA Streptococcus pneumoniae R6

64.932

99.185

0.644
  recA Streptococcus pneumoniae Rx1

64.932

99.185

0.644
  recA Streptococcus pneumoniae TIGR4

64.932

99.185

0.644
  recA Streptococcus mitis NCTC 12261

64.658

99.185

0.641
  recA Streptococcus mitis SK321

64.384

99.185

0.639
  recA Streptococcus mutans UA159

64.986

97.011

0.63
  recA Lactococcus lactis subsp. cremoris KW2

70.679

88.043

0.622
  recA Streptococcus pyogenes NZ131

69.419

88.859

0.617
  recA Neisseria gonorrhoeae strain FA1090

65.123

88.043

0.573
  recA Neisseria gonorrhoeae MS11

65.123

88.043

0.573
  recA Neisseria gonorrhoeae MS11

65.123

88.043

0.573
  recA Ralstonia pseudosolanacearum GMI1000

64.968

85.326

0.554
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.366

89.13

0.538
  recA Pseudomonas stutzeri DSM 10701

59.104

91.033

0.538
  recA Glaesserella parasuis strain SC1401

60.991

87.772

0.535
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.509

88.587

0.527
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.248

87.5

0.527
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.568

88.043

0.524
  recA Vibrio cholerae strain A1552

59.568

88.043

0.524
  recA Acinetobacter baylyi ADP1

58.642

88.043

0.516
  recA Acinetobacter baumannii D1279779

57.716

88.043

0.508
  recA Helicobacter pylori 26695

57.407

88.043

0.505
  recA Helicobacter pylori strain NCTC11637

57.407

88.043

0.505

Multiple sequence alignment