Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FEE40_RS08785 Genome accession   NZ_CP040852
Coordinates   1799564..1801243 (+) Length   559 a.a.
NCBI ID   WP_163587398.1    Uniprot ID   A0AAE6WHI6
Organism   Ligilactobacillus murinus strain V10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1794564..1806243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEE40_RS08755 (FEE40_08705) folD 1794786..1795634 (+) 849 WP_004047596.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  FEE40_RS08760 (FEE40_08710) xseA 1795634..1796977 (+) 1344 WP_056958649.1 exodeoxyribonuclease VII large subunit -
  FEE40_RS08765 (FEE40_08715) - 1796974..1797201 (+) 228 WP_004047599.1 exodeoxyribonuclease VII small subunit -
  FEE40_RS08770 (FEE40_08720) - 1797306..1798184 (+) 879 WP_163587400.1 polyprenyl synthetase family protein -
  FEE40_RS08775 (FEE40_08725) - 1798199..1799026 (+) 828 WP_163587399.1 TlyA family RNA methyltransferase -
  FEE40_RS08780 (FEE40_08730) - 1799047..1799505 (+) 459 WP_004047604.1 arginine repressor -
  FEE40_RS08785 (FEE40_08735) recN 1799564..1801243 (+) 1680 WP_163587398.1 DNA repair protein RecN Machinery gene
  FEE40_RS08790 (FEE40_08740) lexA 1801330..1801953 (-) 624 WP_004047608.1 transcriptional repressor LexA -
  FEE40_RS08795 (FEE40_08745) - 1802117..1802413 (+) 297 WP_004047610.1 DUF896 domain-containing protein -
  FEE40_RS08800 (FEE40_08750) - 1802494..1802718 (+) 225 WP_004047611.1 YneF family protein -
  FEE40_RS08805 (FEE40_08755) - 1802767..1803393 (-) 627 WP_004047612.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  FEE40_RS08810 (FEE40_08760) - 1803599..1804357 (+) 759 WP_004047615.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  FEE40_RS08815 (FEE40_08765) - 1804341..1804628 (+) 288 WP_004047616.1 GIY-YIG nuclease family protein -
  FEE40_RS08820 (FEE40_08770) - 1804771..1805766 (+) 996 WP_163587397.1 D-2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 63021.29 Da        Isoelectric Point: 4.5429

>NTDB_id=367633 FEE40_RS08785 WP_163587398.1 1799564..1801243(+) (recN) [Ligilactobacillus murinus strain V10]
MLQELMIRDFAIIDQLTVDFGTNMTVLTGETGAGKSIIIDALGLLAGGRGSSDFIRKGANKSLLQGQFTIPKATRTYELL
DEFGIECEDDILILQRDIYRSGKNVCRINGVLVNLGTLRQVGQTLIDIHGQNEHQELMDPERHLALVDNYQPEILAKLAQ
YQILYANYRRLSQALEQREKNAHEWAQRLDMLQFQVNEISEAQLHEGEEEELQEQKRQLDNYQTIHHALEMSYQALNGEE
LDVMSVLGNVMSELEDVAEFNSELAAIYEKVSDAFYNLQDVAHEVSGQLSDLEWDEELLNSIEARLETIHQLKRKYGDSI
ETILAYYDKIKRELETMQQSDENLEQQVEQVKEAHSKAKKLALEISELRKETAKCLEAEIHQQLSALYMDKAVFEVRFLP
ANGQLTETGLDRVEFYIQTNPGEEMGALARIASGGELSRIMLALKTIFAQNKGVTSIIFDEVDTGVSGRVAQAIAEKISQ
IATNSQVLCITHLPQVAAVADHHYFIAKHVANGRTETSLTILNDKERIEELARMLSGSSITTLTLEHAEELLKMAKEGK

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=367633 FEE40_RS08785 WP_163587398.1 1799564..1801243(+) (recN) [Ligilactobacillus murinus strain V10]
TTGTTACAAGAATTAATGATCCGTGATTTTGCAATTATTGATCAGTTGACCGTCGATTTTGGAACGAATATGACGGTCTT
GACTGGTGAAACTGGGGCTGGTAAGTCCATCATTATTGATGCTTTAGGTCTACTAGCAGGTGGACGTGGCTCGAGTGATT
TTATCCGCAAGGGAGCTAATAAATCATTGCTCCAAGGACAATTTACTATCCCTAAAGCAACTCGAACATATGAGCTTTTA
GATGAATTTGGGATCGAATGTGAAGATGATATTTTGATCTTACAACGCGATATTTATCGCAGTGGCAAAAATGTTTGCCG
AATAAATGGCGTTTTGGTCAATCTAGGTACACTTCGGCAGGTGGGGCAAACATTGATCGATATCCATGGGCAAAATGAGC
ATCAAGAATTGATGGATCCTGAGCGTCATTTAGCTCTAGTCGATAATTATCAGCCTGAGATCTTAGCTAAATTAGCACAA
TATCAGATACTTTATGCCAATTATCGCCGTCTTTCTCAGGCACTAGAGCAACGTGAGAAAAATGCACATGAGTGGGCGCA
AAGACTTGATATGTTACAATTTCAAGTTAATGAGATCAGTGAGGCGCAGCTACATGAGGGTGAAGAAGAAGAGCTCCAAG
AACAAAAACGTCAATTAGATAATTATCAAACGATCCATCACGCGTTAGAGATGAGTTATCAAGCACTGAATGGTGAAGAA
TTAGATGTGATGAGTGTTCTAGGAAATGTCATGAGTGAGTTAGAAGACGTGGCTGAGTTCAATTCTGAATTAGCTGCGAT
CTACGAAAAGGTCTCTGATGCTTTCTATAATCTACAAGATGTAGCGCATGAAGTTTCAGGGCAATTAAGTGATCTGGAGT
GGGATGAAGAATTGTTAAATTCCATCGAAGCACGGCTTGAAACGATCCATCAACTCAAGCGTAAATATGGCGATTCGATC
GAAACGATCTTGGCTTATTACGATAAGATAAAACGCGAACTTGAAACGATGCAACAAAGCGATGAAAACTTAGAACAGCA
AGTCGAGCAGGTCAAAGAAGCTCATAGCAAGGCAAAAAAATTAGCGTTAGAGATCAGTGAGTTGCGTAAAGAGACTGCTA
AATGTCTTGAAGCTGAGATCCATCAGCAGTTGAGTGCACTATATATGGATAAAGCTGTTTTTGAAGTGCGATTTTTACCG
GCGAATGGACAATTGACTGAAACTGGCCTTGATCGGGTCGAATTTTACATTCAAACTAATCCCGGAGAAGAAATGGGGGC
TTTAGCAAGAATCGCTTCTGGTGGTGAATTATCGCGGATCATGCTCGCGCTAAAGACGATCTTTGCTCAAAATAAAGGTG
TGACGAGTATTATTTTCGATGAGGTCGATACTGGAGTCAGTGGACGTGTCGCACAAGCAATCGCTGAAAAGATCAGCCAG
ATCGCAACTAATTCGCAGGTGCTGTGTATCACCCACTTGCCACAGGTCGCGGCTGTGGCAGACCACCATTATTTTATTGC
TAAACATGTAGCCAATGGGCGGACTGAAACTTCGCTTACGATCTTAAATGATAAAGAACGGATCGAAGAACTAGCCCGGA
TGCTGTCAGGTTCTTCGATCACGACTTTGACACTAGAACATGCAGAAGAACTGCTAAAAATGGCTAAGGAAGGTAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.14

100

0.487

Multiple sequence alignment