Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GZS17_RS07730 Genome accession   NZ_CP048304
Coordinates   1632897..1633412 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain 9     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1627897..1638412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZS17_RS07680 (GZS17_07680) csrA 1628614..1628799 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  GZS17_RS07715 (GZS17_07715) yqaB 1630127..1630693 (+) 567 WP_021566826.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  GZS17_RS07720 (GZS17_07720) yqaA 1630690..1631118 (+) 429 WP_001287462.1 YqaA family protein -
  GZS17_RS07725 (GZS17_07725) gshA 1631191..1632747 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  GZS17_RS07730 (GZS17_07730) luxS 1632897..1633412 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  GZS17_RS07735 (GZS17_07735) - 1633461..1634573 (-) 1113 WP_000638135.1 ATP-binding protein -
  GZS17_RS07740 (GZS17_07740) - 1634570..1635267 (-) 698 Protein_1517 RNA ligase family protein -
  GZS17_RS07745 (GZS17_07745) emrB 1635525..1637063 (-) 1539 WP_001305258.1 multidrug efflux MFS transporter permease subunit EmrB -
  GZS17_RS07750 (GZS17_07750) emrA 1637080..1638252 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=367627 GZS17_RS07730 WP_001130208.1 1632897..1633412(+) (luxS) [Escherichia coli strain 9]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=367627 GZS17_RS07730 WP_001130208.1 1632897..1633412(+) (luxS) [Escherichia coli strain 9]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACTTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737