Detailed information NTG0367624

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GZS17_RS07435
• Genome accession: NZ_CP048304
• Coordinates: 1579470..1580462 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 9
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1574470..1585462

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GZS17_RS07405 (GZS17_07405)	ispD	1574531..1575241 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GZS17_RS07410 (GZS17_07410)	ispF	1575241..1575720 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GZS17_RS07415 (GZS17_07415)	truD	1575717..1576766 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
GZS17_RS07420 (GZS17_07420)	surE	1576747..1577508 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GZS17_RS07425 (GZS17_07425)	pcm	1577502..1578128 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
GZS17_RS07430 (GZS17_07430)	nlpD	1578313..1579407 (+)	1095	WP_306163061.1	murein hydrolase activator NlpD	-
GZS17_RS07435 (GZS17_07435)	rpoS	1579470..1580462 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GZS17_RS07440 (GZS17_07440)	-	1580640..1581191 (-)	552	WP_001179443.1	flavodoxin family protein	-
GZS17_RS07445 (GZS17_07445)	-	1581416..1582459 (+)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
GZS17_RS07450 (GZS17_07450)	ygbN	1582602..1583966 (-)	1365	WP_000104433.1	GntP family transporter	-
GZS17_RS07455 (GZS17_07455)	ygbM	1584055..1584831 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=367624 GZS17_RS07435 WP_000081550.1 1579470..1580462(+) (rpoS) [Escherichia coli strain 9]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=367624 GZS17_RS07435 WP_000081550.1 1579470..1580462(+) (rpoS) [Escherichia coli strain 9]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGTGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715