Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GYN04_RS10990 Genome accession   NZ_CP048254
Coordinates   2094851..2095357 (+) Length   168 a.a.
NCBI ID   WP_003687075.1    Uniprot ID   Q5F534
Organism   Neisseria gonorrhoeae strain CT530     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2089851..2100357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN04_RS10955 (GYN04_10660) - 2090288..2091823 (+) 1536 WP_010359695.1 sodium-dependent transporter -
  GYN04_RS10960 (GYN04_10665) - 2091820..2091912 (+) 93 WP_010356218.1 methionine/alanine import family NSS transporter small subunit -
  GYN04_RS10965 (GYN04_10670) - 2091948..2092388 (-) 441 WP_003694629.1 hypothetical protein -
  GYN04_RS10970 (GYN04_10675) lysA 2092582..2093802 (-) 1221 WP_003687069.1 diaminopimelate decarboxylase -
  GYN04_RS10975 (GYN04_10680) - 2093813..2093983 (-) 171 WP_003687071.1 lipoprotein -
  GYN04_RS10980 (GYN04_10685) cyaY 2094054..2094377 (+) 324 WP_002226758.1 iron donor protein CyaY -
  GYN04_RS10985 (GYN04_10690) - 2094410..2094829 (+) 420 WP_123771474.1 DUF2251 domain-containing protein -
  GYN04_RS10990 (GYN04_10695) luxS 2094851..2095357 (+) 507 WP_003687075.1 S-ribosylhomocysteine lyase Regulator
  GYN04_RS10995 (GYN04_10700) polA 2095502..2098294 (+) 2793 WP_003687077.1 DNA polymerase I -
  GYN04_RS11000 (GYN04_10705) - 2098856..2099551 (+) 696 WP_003687079.1 Fic family protein -
  GYN04_RS11005 - 2099543..2099653 (-) 111 Protein_2133 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18623.45 Da        Isoelectric Point: 5.9060

>NTDB_id=367582 GYN04_RS10990 WP_003687075.1 2094851..2095357(+) (luxS) [Neisseria gonorrhoeae strain CT530]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCIPNKEILPEKGIHTLEHLFAGFMRDHLNGAGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVLNVKDQSKIPELNEYQCGTYLMHSLAEAQQIAQNVLARKVAVNRNGDLA
LDESLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=367582 GYN04_RS10990 WP_003687075.1 2094851..2095357(+) (luxS) [Neisseria gonorrhoeae strain CT530]
ATGCCCCTGTTAGACAGTTTCAAAGTCGATCACACCCGTATGCACGCCCCTGCCGTACGCGTGGCGAAAACCATGACCAC
GCCCAAAGGCGACACCATTACTGTATTCGACCTGCGCTTTTGCATCCCCAATAAAGAAATCCTGCCCGAAAAAGGCATCC
ACACGCTGGAGCATTTGTTTGCCGGCTTTATGCGCGACCACTTGAACGGCGCCGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTTTATATGAGCCTTATCGGCACGCCTTCCGAACAGCAGGTTGCCGATGCGTGGTTGGCTTC
GATGCAGGATGTTTTGAATGTCAAAGACCAAAGTAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCTGATGC
ACTCGCTCGCCGAAGCGCAACAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTTAACCGAAACGGCGATTTGGCT
TTGGATGAAAGCCTGCTGAACGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F534

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

78.443

99.405

0.78