Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   GYN05_RS10700 Genome accession   NZ_CP048250
Coordinates   2049567..2049710 (-) Length   47 a.a.
NCBI ID   WP_050171575.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT532     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2044567..2054710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN05_RS10680 (GYN05_10445) pilA 2045922..2047175 (+) 1254 WP_250328967.1 signal recognition particle-docking protein FtsY Machinery gene
  GYN05_RS10685 - 2047253..2047426 (-) 174 WP_164823228.1 hypothetical protein -
  GYN05_RS10690 (GYN05_10450) - 2047440..2048270 (-) 831 WP_250329010.1 opacity family porin -
  GYN05_RS10695 (GYN05_10455) - 2048681..2049198 (-) 518 Protein_2075 pilin -
  GYN05_RS10700 (GYN05_10460) pilE 2049567..2049710 (-) 144 WP_050171575.1 hypothetical protein Machinery gene
  GYN05_RS10705 - 2049815..2049895 (-) 81 Protein_2077 pilin -
  GYN05_RS10710 (GYN05_10465) - 2049969..2050364 (-) 396 Protein_2078 pilin -
  GYN05_RS10715 (GYN05_10470) - 2050472..2050879 (-) 408 Protein_2079 pilin -
  GYN05_RS10720 (GYN05_10475) lpxC 2051008..2051931 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  GYN05_RS11815 - 2052506..2053339 (-) 834 WP_348635260.1 pilin -
  GYN05_RS10735 (GYN05_10485) - 2053357..2053707 (-) 351 Protein_2082 pilin -
  GYN05_RS10740 (GYN05_10490) - 2053734..2054098 (-) 365 Protein_2083 pilin -
  GYN05_RS10745 - 2054138..2054497 (-) 360 Protein_2084 pilin -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5007.43 Da        Isoelectric Point: 6.1895

>NTDB_id=367510 GYN05_RS10700 WP_050171575.1 2049567..2049710(-) (pilE) [Neisseria gonorrhoeae strain CT532]
MTGFNDAAGNEKIDTKHLPSTCRDESSAGCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=367510 GYN05_RS10700 WP_050171575.1 2049567..2049710(-) (pilE) [Neisseria gonorrhoeae strain CT532]
ATGACGGGATTTAATGATGCCGCCGGCAACGAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATC
TGCCGGTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.333

63.83

0.468