Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   SLIT_RS14665 Genome accession   NC_013959
Coordinates   2957610..2958020 (-) Length   136 a.a.
NCBI ID   WP_013031061.1    Uniprot ID   D5CQE4
Organism   Sideroxydans lithotrophicus ES-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2952610..2963020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLIT_RS14650 (Slit_2937) - 2954705..2956726 (-) 2022 WP_013031058.1 methyl-accepting chemotaxis protein -
  SLIT_RS14655 (Slit_2938) - 2956747..2957241 (-) 495 WP_013031059.1 chemotaxis protein CheW -
  SLIT_RS14660 (Slit_2939) - 2957255..2957620 (-) 366 WP_013031060.1 response regulator transcription factor -
  SLIT_RS14665 (Slit_2940) pilG 2957610..2958020 (-) 411 WP_013031061.1 PleD family two-component system response regulator Regulator
  SLIT_RS14670 (Slit_2941) - 2958136..2959593 (-) 1458 WP_013031062.1 TrkH family potassium uptake protein -
  SLIT_RS14675 (Slit_2942) trkA 2959593..2960966 (-) 1374 WP_013031063.1 Trk system potassium transporter TrkA -
  SLIT_RS14680 (Slit_2943) - 2961012..2961563 (-) 552 WP_013031064.1 thioredoxin family protein -
  SLIT_RS14685 (Slit_2944) - 2961642..2962379 (+) 738 WP_013031065.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  SLIT_RS14690 (Slit_2945) - 2962387..2963001 (-) 615 WP_013031066.1 OmpA family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14873.12 Da        Isoelectric Point: 6.4613

>NTDB_id=36751 SLIT_RS14665 WP_013031061.1 2957610..2958020(-) (pilG) [Sideroxydans lithotrophicus ES-1]
MGEGLAGIRVVLIDDSNTIRRSGEIFLSQAGCKVVLAEDGFDGLSKVVDNKPDIIFVDVMMPRLDGYQTCALIKNHAEFK
DTPVVMLTSKDSLFDRARGKLVGADQYLTKPFSKKSLIEAVTMHTNKQSGGMDYGN

Nucleotide


Download         Length: 411 bp        

>NTDB_id=36751 SLIT_RS14665 WP_013031061.1 2957610..2958020(-) (pilG) [Sideroxydans lithotrophicus ES-1]
GTGGGCGAGGGTCTGGCTGGTATCCGTGTGGTGCTCATCGACGACAGCAACACCATACGCCGCAGCGGCGAAATATTCCT
GTCGCAGGCGGGCTGCAAGGTCGTACTGGCCGAAGACGGCTTTGACGGTCTGTCCAAGGTGGTCGACAACAAACCCGATA
TCATCTTCGTCGATGTCATGATGCCGCGTCTGGATGGATATCAGACTTGCGCGCTGATCAAGAACCATGCTGAATTCAAG
GATACGCCGGTGGTCATGCTGACCAGCAAGGACAGTCTGTTCGACCGTGCGCGCGGCAAGCTGGTCGGGGCCGACCAGTA
TTTGACCAAACCGTTCAGCAAGAAAAGTTTAATAGAAGCAGTGACCATGCATACAAACAAGCAAAGCGGGGGGATGGATT
ATGGCAATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D5CQE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

55.556

92.647

0.515

Multiple sequence alignment