Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   FGY93_RS12160 Genome accession   NZ_CP040829
Coordinates   2771341..2772294 (+) Length   317 a.a.
NCBI ID   WP_016820350.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain ZF129     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2766341..2777294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGY93_RS12145 (FGY93_12145) - 2768634..2769311 (-) 678 WP_016820352.1 ABC transporter ATP-binding protein -
  FGY93_RS12150 (FGY93_12150) - 2769420..2770337 (-) 918 WP_029514358.1 sensor histidine kinase KdpD -
  FGY93_RS12155 (FGY93_12155) - 2770339..2771016 (-) 678 WP_013373136.1 response regulator transcription factor -
  FGY93_RS12160 (FGY93_12160) ceuB 2771341..2772294 (+) 954 WP_016820350.1 ABC transporter permease Machinery gene
  FGY93_RS12165 (FGY93_12165) - 2772284..2773234 (+) 951 WP_126666631.1 iron chelate uptake ABC transporter family permease subunit -
  FGY93_RS12170 (FGY93_12170) - 2773228..2773986 (+) 759 WP_045245008.1 ABC transporter ATP-binding protein -
  FGY93_RS12175 (FGY93_12175) - 2773999..2774979 (+) 981 WP_031462258.1 siderophore ABC transporter substrate-binding protein -
  FGY93_RS12180 (FGY93_12180) - 2775012..2775755 (+) 744 WP_126666658.1 alpha/beta hydrolase -
  FGY93_RS12185 (FGY93_12185) - 2775914..2776825 (+) 912 WP_126666632.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34760.82 Da        Isoelectric Point: 9.9902

>NTDB_id=367501 FGY93_RS12160 WP_016820350.1 2771341..2772294(+) (ceuB) [Paenibacillus polymyxa strain ZF129]
MKLRYLILAFLVLAFASVFIGVHDVTPLDLFHLTKDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=367501 FGY93_RS12160 WP_016820350.1 2771341..2772294(+) (ceuB) [Paenibacillus polymyxa strain ZF129]
ATGAAATTGCGCTATTTAATATTAGCTTTTCTGGTACTGGCCTTCGCCTCGGTGTTCATCGGTGTTCATGATGTGACTCC
ACTTGATTTGTTCCACTTAACCAAAGATCAAGCGCAGGTGCTCCTGATTAGCAGATTTCCACGTTTGATCAGCATCATTA
TCGCAGGGGCGAGTATGAGTATCTGCGGGCTGATCATGCAGCAGCTTACCCGGAATCGGTTTGTTTCGCCCACCACCGCA
GGGACGATGGATGCGGCACGATTAGGTGTGCTGATGGCCATTATGGTGTTTGGAGCGGCGGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTCTAGGGGGAACGCTGATTTTTATGAAGATATTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTGACGACTTTTTTTGCTTACAAATACAATCTGATT
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTCATTATGAGTGGTCGCTACGAGATGCTGTATCTCAGTGTTCC
TTTGGTCGCGTTGGCGTACATATATGCGAACCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCAGCCAATTTGGGCG
TACATTACAAGCGCACTGTCAATGTTGGTTTGGTGATCGTGGCTTTGGTGTCCTCTGTTGTTATCTTAACCGTCGGGACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGTATGTACATGGGGGATAATCTGAAAAAAAGCCTAGCACATAC
AGCGATCTTGGGTGCCGTGTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTACCCATATGAGATTTCTGTAG
GGCTTACGGTTGGTGTAATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508

Multiple sequence alignment