Detailed information NTG0367500

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: FGY93_RS11215
• Genome accession: NZ_CP040829
• Coordinates: 2557087..2558460 (+)
• Length: 457 a.a.
• NCBI ID: WP_013373291.1
• Uniprot ID: -
• Organism: Paenibacillus polymyxa strain ZF129
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2552087..2563460

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGY93_RS11195 (FGY93_11195)	-	2552188..2552652 (+)	465	WP_126666918.1	CtsR family transcriptional regulator	-
FGY93_RS11200 (FGY93_11200)	-	2552737..2553261 (+)	525	WP_016818632.1	UvrB/UvrC motif-containing protein	-
FGY93_RS11205 (FGY93_11205)	-	2553291..2554355 (+)	1065	WP_090738074.1	protein arginine kinase	-
FGY93_RS11210 (FGY93_11210)	clpC	2554400..2556844 (+)	2445	WP_016818634.1	ATP-dependent protease ATP-binding subunit ClpC	-
FGY93_RS11215 (FGY93_11215)	radA	2557087..2558460 (+)	1374	WP_013373291.1	DNA repair protein RadA	Machinery gene
FGY93_RS11220 (FGY93_11220)	disA	2558473..2559549 (+)	1077	WP_013373290.1	DNA integrity scanning diadenylate cyclase DisA	-
FGY93_RS11225 (FGY93_11225)	pssA	2559604..2560350 (+)	747	Protein_2150	CDP-diacylglycerol--serine O-phosphatidyltransferase	-
FGY93_RS11230 (FGY93_11230)	-	2560541..2561626 (+)	1086	WP_117290600.1	PIN/TRAM domain-containing protein	-
FGY93_RS11235 (FGY93_11235)	ispD	2561697..2562395 (+)	699	WP_117290598.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FGY93_RS11240 (FGY93_11240)	ispF	2562392..2562868 (+)	477	WP_016818638.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49242.94 Da
• Isoelectric Point: 6.7620

>NTDB_id=367500 FGY93_RS11215 WP_013373291.1 2557087..2558460(+) (radA) [Paenibacillus polymyxa strain ZF129]
MAKVKTKFSCTECGYESPKWYGKCPGCQAWNSMVEETESVVKTQGMGSSLLTHSTKDKPLPIIEVESGKETRILTGIGEL
NRVLGGGVVPGSLVLVGGDPGIGKSTLMLQTSNELALTGLKVLYVSGEESVRQTKLRADRLGALSPSLYVLCETNLETIE
EAVDSLKPEFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGLGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYF
EGERHHTYRLLRAVKNRFGSTNEIGIFEMAESGLREVANPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALIAATHF
PSPRRMGTGIDHHRMGLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDAPTKPYDVIFGEVGLT
GEVRAVSRAEQRVREAEKLGFKRVIMPEKSLKGWTHPKGIQIIGVGTVADALAAALD

Nucleotide

• Length: 1374 bp

>NTDB_id=367500 FGY93_RS11215 WP_013373291.1 2557087..2558460(+) (radA) [Paenibacillus polymyxa strain ZF129]
ATGGCTAAAGTGAAAACTAAATTTTCCTGTACAGAATGTGGCTATGAATCGCCTAAATGGTACGGAAAATGTCCTGGATG
CCAGGCATGGAATTCCATGGTCGAAGAAACGGAAAGCGTTGTAAAAACTCAAGGAATGGGATCTTCCCTTCTTACTCATA
GCACAAAAGACAAACCGCTTCCTATTATTGAAGTGGAGAGTGGCAAAGAAACACGAATTTTGACGGGAATTGGTGAATTA
AATCGTGTACTCGGTGGAGGTGTGGTGCCAGGTTCACTTGTTCTGGTGGGTGGAGACCCGGGGATCGGTAAGTCTACGCT
TATGCTGCAAACCTCTAATGAGCTGGCTTTAACTGGTTTAAAGGTACTCTACGTGTCTGGTGAGGAATCCGTCCGCCAAA
CGAAGCTACGTGCAGATCGCCTCGGTGCTTTGTCTCCCAGTCTGTACGTATTATGTGAGACGAATTTGGAGACGATTGAA
GAAGCAGTGGACAGCTTGAAGCCGGAGTTTCTGGTCATCGACTCGATACAGACTGTATATTTGCCTGAGGTGACAAGTGC
GCCTGGTAGTGTAGCTCAGGTGCGCGAGTGTACTTCACGATTTATGCGGATTGCCAAGGGATTAGGTATTGCTACAGTAC
TGGTAGGGCATGTGACCAAAGAAGGCGCTATTGCAGGTCCGCGTTTGTTGGAGCATATGGTCGATTGTGTACTTTATTTT
GAAGGAGAGCGCCATCATACGTATCGGCTGTTGCGTGCGGTTAAGAATCGTTTCGGTTCTACGAATGAAATTGGTATTTT
TGAAATGGCCGAAAGTGGTTTGCGTGAGGTGGCGAATCCTTCTGAGCTCTTCCTGTCCGAACGGCCACTGGGGGTGGCTG
GTTCCACAGTCGTTGCCAGTATGGAGGGAACCCGGCCTGTGTTGGTTGAATTGCAAGCACTCATTGCGGCTACGCATTTT
CCATCTCCACGCCGAATGGGTACGGGGATTGACCATCATCGGATGGGATTAATAATAGCCGTACTAGAAAAGCGGATGGG
CATGTTTTTGCAAAACCAGGACGCTTATCTCAATGTTGCTGGAGGCGTAAAGCTGGATGAACCAGCGGTGGATTTAGCCA
TAGCGGTGAGCATTGCTTCCAGCTTTAGGGATGCTCCTACCAAGCCGTACGATGTGATTTTTGGTGAAGTAGGACTGACA
GGCGAGGTGCGGGCTGTATCCCGAGCAGAACAGCGAGTGCGAGAAGCAGAGAAATTAGGTTTCAAACGGGTGATCATGCC
CGAGAAAAGCTTGAAGGGCTGGACACATCCAAAAGGGATACAAATTATCGGAGTTGGAACGGTGGCAGATGCACTGGCAG
CCGCATTAGATTAG

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (79-222)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (350-429)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	67.249	100	0.674
radA	Streptococcus pneumoniae Rx1	58.85	98.906	0.582
radA	Streptococcus pneumoniae D39	58.85	98.906	0.582
radA	Streptococcus pneumoniae R6	58.85	98.906	0.582
radA	Streptococcus pneumoniae TIGR4	58.85	98.906	0.582
radA	Streptococcus mitis NCTC 12261	58.85	98.906	0.582
radA	Streptococcus mitis SK321	58.628	98.906	0.58