Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | SLIT_RS11845 | Genome accession | NC_013959 |
| Coordinates | 2396827..2397774 (+) | Length | 315 a.a. |
| NCBI ID | WP_013030494.1 | Uniprot ID | D5CMC4 |
| Organism | Sideroxydans lithotrophicus ES-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2391827..2402774
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SLIT_RS11820 (Slit_2364) | - | 2392746..2393000 (-) | 255 | WP_013030489.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| SLIT_RS11825 (Slit_2365) | coaD | 2393012..2393488 (-) | 477 | WP_013030490.1 | pantetheine-phosphate adenylyltransferase | - |
| SLIT_RS11830 (Slit_2366) | rsmD | 2393485..2394024 (-) | 540 | WP_013030491.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| SLIT_RS11835 (Slit_2367) | - | 2394021..2395391 (-) | 1371 | WP_013030492.1 | pitrilysin family protein | - |
| SLIT_RS11840 (Slit_2368) | - | 2395381..2396745 (-) | 1365 | WP_013030493.1 | pitrilysin family protein | - |
| SLIT_RS11845 (Slit_2369) | pilA | 2396827..2397774 (+) | 948 | WP_013030494.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| SLIT_RS11850 (Slit_2370) | ftsE | 2397812..2398489 (+) | 678 | WP_013030495.1 | cell division ATP-binding protein FtsE | - |
| SLIT_RS11855 (Slit_2371) | ftsX | 2398486..2399391 (+) | 906 | WP_013030496.1 | permease-like cell division protein FtsX | - |
| SLIT_RS11860 (Slit_2372) | - | 2399535..2399990 (+) | 456 | WP_013030497.1 | bacteriohemerythrin | - |
| SLIT_RS11865 (Slit_2373) | - | 2400061..2400519 (-) | 459 | WP_013030498.1 | Rrf2 family transcriptional regulator | - |
| SLIT_RS11870 (Slit_2374) | - | 2400736..2401101 (+) | 366 | WP_013030499.1 | group 1 truncated hemoglobin | - |
| SLIT_RS11875 (Slit_2375) | - | 2401116..2402117 (+) | 1002 | WP_013030500.1 | 2Fe-2S iron-sulfur cluster-binding protein | - |
| SLIT_RS11880 (Slit_2376) | - | 2402281..2402466 (+) | 186 | WP_013030501.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 315 a.a. Molecular weight: 33396.65 Da Isoelectric Point: 8.1057
>NTDB_id=36745 SLIT_RS11845 WP_013030494.1 2396827..2397774(+) (pilA) [Sideroxydans lithotrophicus ES-1]
MFSFLKNTPASAESKSWLSRLTGSLARTGGQLSSLLVPGGKIDDELYEELETILITADVGMDATRSLLADVRRHVKEQRL
TEAGQLKEALAHALLKLLQPLAKPLDVGASRPFVIMLCGVNGAGKTTSIGKLAKHFQNQGKSVLLAAGDTFRAAAREQLM
EWGRRNDVTVIAQQSGDAAAVIYDAVQAAQARGIDVVLADTAGRLTTQAHLMEEIKKVKRVIAKALPGAPHEVLLVLDAN
TGQNALSQVKSFDDALQVTGLVLTKLDGTAKGGVIAAIAKAHPIPVRFIGVGEALDDLRPFVAEDFVAALLGMQV
MFSFLKNTPASAESKSWLSRLTGSLARTGGQLSSLLVPGGKIDDELYEELETILITADVGMDATRSLLADVRRHVKEQRL
TEAGQLKEALAHALLKLLQPLAKPLDVGASRPFVIMLCGVNGAGKTTSIGKLAKHFQNQGKSVLLAAGDTFRAAAREQLM
EWGRRNDVTVIAQQSGDAAAVIYDAVQAAQARGIDVVLADTAGRLTTQAHLMEEIKKVKRVIAKALPGAPHEVLLVLDAN
TGQNALSQVKSFDDALQVTGLVLTKLDGTAKGGVIAAIAKAHPIPVRFIGVGEALDDLRPFVAEDFVAALLGMQV
Nucleotide
Download Length: 948 bp
>NTDB_id=36745 SLIT_RS11845 WP_013030494.1 2396827..2397774(+) (pilA) [Sideroxydans lithotrophicus ES-1]
ATGTTTAGTTTCCTGAAAAATACTCCAGCCTCCGCCGAATCGAAAAGCTGGCTGTCCCGGCTGACAGGCAGCCTGGCGAG
GACAGGTGGACAGCTCTCGTCTTTGCTGGTTCCCGGCGGCAAGATAGACGATGAGCTTTATGAAGAGCTCGAAACCATTC
TCATTACTGCAGACGTGGGCATGGATGCCACGCGCTCGCTGCTGGCAGATGTGCGCCGTCATGTGAAGGAACAGCGCCTG
ACCGAGGCCGGCCAATTGAAAGAAGCGCTGGCGCATGCCTTGCTCAAGCTTCTGCAGCCGTTGGCAAAACCGCTCGATGT
CGGCGCATCCCGGCCTTTCGTCATCATGCTATGCGGCGTCAACGGTGCCGGTAAAACCACTTCCATCGGCAAACTGGCCA
AGCATTTCCAGAATCAGGGCAAGTCGGTGCTGCTGGCGGCAGGCGACACTTTCCGTGCCGCAGCACGCGAACAACTCATG
GAATGGGGAAGGCGCAACGATGTCACCGTCATCGCCCAGCAGAGCGGCGATGCTGCCGCAGTGATCTACGACGCCGTGCA
GGCAGCGCAAGCACGCGGCATCGATGTGGTATTGGCCGACACCGCCGGGCGCCTGACCACCCAGGCGCACCTGATGGAAG
AGATCAAGAAGGTGAAGCGTGTCATCGCCAAGGCGCTGCCCGGTGCGCCGCATGAAGTGCTGCTGGTGCTGGATGCCAAC
ACCGGGCAGAACGCGCTGTCGCAGGTCAAATCCTTCGATGATGCGTTGCAGGTGACCGGCCTGGTGCTGACCAAGCTTGA
CGGCACCGCCAAGGGGGGCGTCATTGCAGCCATCGCCAAGGCACATCCCATCCCCGTGCGATTCATCGGCGTTGGTGAAG
CGCTGGACGATCTGCGGCCTTTCGTGGCCGAGGATTTCGTTGCCGCATTGCTGGGCATGCAGGTATGA
ATGTTTAGTTTCCTGAAAAATACTCCAGCCTCCGCCGAATCGAAAAGCTGGCTGTCCCGGCTGACAGGCAGCCTGGCGAG
GACAGGTGGACAGCTCTCGTCTTTGCTGGTTCCCGGCGGCAAGATAGACGATGAGCTTTATGAAGAGCTCGAAACCATTC
TCATTACTGCAGACGTGGGCATGGATGCCACGCGCTCGCTGCTGGCAGATGTGCGCCGTCATGTGAAGGAACAGCGCCTG
ACCGAGGCCGGCCAATTGAAAGAAGCGCTGGCGCATGCCTTGCTCAAGCTTCTGCAGCCGTTGGCAAAACCGCTCGATGT
CGGCGCATCCCGGCCTTTCGTCATCATGCTATGCGGCGTCAACGGTGCCGGTAAAACCACTTCCATCGGCAAACTGGCCA
AGCATTTCCAGAATCAGGGCAAGTCGGTGCTGCTGGCGGCAGGCGACACTTTCCGTGCCGCAGCACGCGAACAACTCATG
GAATGGGGAAGGCGCAACGATGTCACCGTCATCGCCCAGCAGAGCGGCGATGCTGCCGCAGTGATCTACGACGCCGTGCA
GGCAGCGCAAGCACGCGGCATCGATGTGGTATTGGCCGACACCGCCGGGCGCCTGACCACCCAGGCGCACCTGATGGAAG
AGATCAAGAAGGTGAAGCGTGTCATCGCCAAGGCGCTGCCCGGTGCGCCGCATGAAGTGCTGCTGGTGCTGGATGCCAAC
ACCGGGCAGAACGCGCTGTCGCAGGTCAAATCCTTCGATGATGCGTTGCAGGTGACCGGCCTGGTGCTGACCAAGCTTGA
CGGCACCGCCAAGGGGGGCGTCATTGCAGCCATCGCCAAGGCACATCCCATCCCCGTGCGATTCATCGGCGTTGGTGAAG
CGCTGGACGATCTGCGGCCTTTCGTGGCCGAGGATTTCGTTGCCGCATTGCTGGGCATGCAGGTATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
65.217 |
94.921 |
0.619 |