Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FEZ18_RS07575 Genome accession   NZ_CP040813
Coordinates   1826847..1828205 (-) Length   452 a.a.
NCBI ID   WP_153267761.1    Uniprot ID   A0A5Q0K0B5
Organism   Oceanihabitans sp. IOP_32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1821847..1833205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEZ18_RS07565 (FEZ18_07575) - 1824584..1825759 (-) 1176 WP_153267759.1 P1 family peptidase -
  FEZ18_RS07570 (FEZ18_07580) - 1825762..1826529 (-) 768 WP_153267760.1 aspartate/glutamate racemase family protein -
  FEZ18_RS07575 (FEZ18_07585) radA 1826847..1828205 (-) 1359 WP_153267761.1 DNA repair protein RadA Machinery gene
  FEZ18_RS07580 (FEZ18_07590) - 1828239..1829387 (-) 1149 WP_153267762.1 alpha/beta hydrolase -
  FEZ18_RS07585 (FEZ18_07595) - 1829492..1830472 (-) 981 WP_153267763.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  FEZ18_RS07590 (FEZ18_07600) panD 1830477..1830827 (-) 351 WP_153267764.1 aspartate 1-decarboxylase -
  FEZ18_RS07595 (FEZ18_07605) panC 1830840..1831691 (-) 852 WP_153267765.1 pantoate--beta-alanine ligase -
  FEZ18_RS07600 (FEZ18_07610) - 1831835..1832644 (+) 810 WP_153267766.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 49794.45 Da        Isoelectric Point: 7.3079

>NTDB_id=367430 FEZ18_RS07575 WP_153267761.1 1826847..1828205(-) (radA) [Oceanihabitans sp. IOP_32]
MAKLKTTFFCQSCGNQFAKWQGQCTVCKAWNTIVEEVLQKPEKSDWKTPTSTKKRAAVPLRINDIDSTKEARLDTFDGEL
NRVLGGGIVPGSLTLLGGEPGIGKSTLMLQISLKLPYKTLYVSGEESQKQIKMRAERINPSNSNCYILTETKTQNIFKQI
ENLEPDIVIIDSIQTLHSDYIEASAGSISQIKECTTELIKFAKETSTPVLLIGHITKDGHIAGPKILEHMVDTVLQFEGD
RNHVFRILRAHKNRFGSTNELGIYEMQGSGLREVSNPSELLISQKDEELSGNAIAATLEGMRPLMIEVQALVSTAVYGTP
QRSATGFNAKRLNMLLAVLEKRAGFKLGAKDVFLNITGGITVDDPAIDLAVVAAILSSNEDMALQKDFCFAAEVGLSGEI
RPVQRVEQRILEAEKLGFSTIFVSKYNKISLKNTTIKIQLISKIEDLVGFVV

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=367430 FEZ18_RS07575 WP_153267761.1 1826847..1828205(-) (radA) [Oceanihabitans sp. IOP_32]
ATGGCAAAACTAAAAACAACATTTTTCTGTCAAAGTTGTGGCAACCAATTTGCAAAGTGGCAAGGCCAATGTACCGTGTG
CAAAGCATGGAATACGATTGTTGAAGAAGTGTTACAAAAGCCTGAAAAAAGCGATTGGAAAACACCAACATCAACTAAAA
AACGTGCGGCCGTACCATTACGAATTAACGACATAGACAGCACAAAAGAAGCTAGGTTAGATACTTTTGATGGCGAATTA
AATCGTGTTTTAGGTGGCGGTATTGTACCGGGATCCTTAACACTTTTAGGGGGTGAACCTGGTATTGGAAAAAGTACCTT
AATGCTTCAAATATCCTTAAAACTCCCTTATAAAACCTTATATGTTTCGGGTGAAGAAAGCCAGAAACAAATAAAAATGC
GTGCAGAACGCATTAATCCCAGTAATAGTAATTGCTACATTCTAACAGAAACCAAGACTCAAAACATATTTAAACAAATT
GAAAATTTAGAACCGGATATTGTTATTATAGATTCTATTCAAACGCTTCATAGCGATTATATTGAAGCTTCCGCGGGAAG
TATTTCACAAATAAAAGAATGCACCACCGAGCTTATAAAATTTGCCAAAGAAACCTCGACCCCCGTACTATTAATAGGCC
ACATCACAAAAGACGGTCATATTGCAGGCCCAAAAATATTAGAACATATGGTCGACACGGTTTTACAATTTGAAGGTGAT
CGCAATCATGTATTTAGAATTTTACGAGCACACAAAAACCGCTTTGGATCTACCAACGAACTCGGCATTTACGAAATGCA
AGGCTCGGGGCTACGCGAAGTTTCAAATCCTTCCGAATTGTTAATTTCCCAAAAAGACGAAGAGCTATCTGGAAACGCTA
TTGCAGCCACTCTGGAGGGCATGCGCCCTTTAATGATCGAGGTTCAAGCCTTGGTAAGTACCGCAGTTTATGGCACACCA
CAACGAAGTGCCACAGGTTTTAATGCCAAACGATTAAACATGCTATTGGCTGTTCTAGAAAAAAGAGCTGGTTTTAAACT
TGGTGCAAAAGATGTGTTTTTAAACATTACCGGAGGGATTACCGTAGACGACCCAGCAATCGATTTGGCAGTGGTCGCTG
CTATTTTATCCTCTAATGAAGATATGGCTCTTCAAAAAGACTTTTGCTTTGCTGCCGAGGTTGGTCTATCTGGTGAAATT
AGACCGGTACAGCGTGTAGAACAACGTATCCTAGAGGCCGAAAAACTAGGGTTTTCAACTATTTTTGTGTCTAAATACAA
TAAAATCTCTCTTAAAAACACCACTATTAAAATTCAATTAATTTCTAAAATTGAGGATTTGGTTGGCTTTGTGGTGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(68-219)

Subunit ChlI of Mg-chelatase (ChlI)

(327-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q0K0B5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

48.984

98.009

0.48
  radA Streptococcus pneumoniae Rx1

49.883

94.469

0.471
  radA Streptococcus pneumoniae D39

49.883

94.469

0.471
  radA Streptococcus mitis NCTC 12261

49.883

94.469

0.471
  radA Streptococcus pneumoniae R6

49.883

94.469

0.471
  radA Streptococcus pneumoniae TIGR4

49.883

94.469

0.471
  radA Bacillus subtilis subsp. subtilis str. 168

49.302

95.133

0.469

Multiple sequence alignment