Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FHG64_RS10465 Genome accession   NZ_CP040812
Coordinates   2466403..2467767 (-) Length   454 a.a.
NCBI ID   WP_139066354.1    Uniprot ID   -
Organism   Antarcticibacterium flavum strain JB01H24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2461403..2472767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHG64_RS10445 (FHG64_10445) - 2462034..2462990 (+) 957 WP_139066350.1 OmpA family protein -
  FHG64_RS10450 (FHG64_10450) - 2463041..2464009 (-) 969 WP_139066351.1 carbohydrate kinase family protein -
  FHG64_RS10455 (FHG64_10455) - 2464192..2465223 (+) 1032 WP_139066352.1 NADP(H)-dependent aldo-keto reductase -
  FHG64_RS10460 (FHG64_10460) - 2465220..2466359 (-) 1140 WP_139066353.1 M23 family metallopeptidase -
  FHG64_RS10465 (FHG64_10465) radA 2466403..2467767 (-) 1365 WP_139066354.1 DNA repair protein RadA Machinery gene
  FHG64_RS10470 (FHG64_10470) - 2467787..2468935 (-) 1149 WP_139066355.1 alpha/beta hydrolase -
  FHG64_RS10475 (FHG64_10475) - 2468971..2469936 (-) 966 WP_139066356.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  FHG64_RS10480 (FHG64_10480) panD 2469941..2470291 (-) 351 WP_139066357.1 aspartate 1-decarboxylase -
  FHG64_RS10485 (FHG64_10485) panC 2470301..2471152 (-) 852 WP_139066358.1 pantoate--beta-alanine ligase -
  FHG64_RS10490 (FHG64_10490) - 2471255..2472067 (+) 813 WP_139066359.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49968.31 Da        Isoelectric Point: 7.1201

>NTDB_id=367417 FHG64_RS10465 WP_139066354.1 2466403..2467767(-) (radA) [Antarcticibacterium flavum strain JB01H24]
MAKTKTTFYCQNCGTQHSKWQGQCSSCKEWNTLVEEVIQKPDQKDWKPQAAREVKRTAKPLRIAEIEIGSQPRLNTNNSE
LNRVLGGGLVPGSLTLLGGEPGIGKSTLLLQISLHLNQKTLYVSGEESQQQIKMRAERINPNPANCYILTETKTQNIFRQ
IEELQPEIVIIDSIQTLHTDYIESSPGSISQIRECTAELIKYAKETGVPVILIGHITKEGSIAGPKVLEHMVDTVLQFEG
DRNHVYRILRAHKNRFGSTHELGIYEMQGSGLREVSNPSEILISKNDEGLSGTAIAATLEGMRPLMIEIQALVSSAVYGT
PQRSATGYNAKRLNMLLAVLEKRAGFRLGAKDVFLNITGGITVDDPAIDLAVIAAILSSNEDITIEKDICFAAEVGLAGE
IRPVTRADQRISEAEKLGFATIMVSKQTKLPATNYTIRVQKVAKIEDVVSYLFG

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=367417 FHG64_RS10465 WP_139066354.1 2466403..2467767(-) (radA) [Antarcticibacterium flavum strain JB01H24]
ATGGCAAAAACCAAAACTACCTTTTACTGTCAAAATTGTGGAACCCAACATTCCAAATGGCAGGGACAATGCAGTTCCTG
TAAAGAATGGAATACTCTTGTAGAAGAGGTAATTCAAAAACCAGATCAAAAGGACTGGAAACCACAGGCGGCAAGGGAGG
TAAAAAGAACTGCAAAACCCTTACGCATTGCAGAGATCGAAATTGGCAGCCAGCCCAGGTTAAACACCAATAATTCAGAA
TTAAACCGGGTGCTGGGCGGTGGCCTTGTACCCGGTTCTTTAACGCTCCTGGGTGGGGAGCCCGGGATTGGAAAGAGTAC
GCTCCTGCTCCAAATCTCTCTTCATTTAAACCAAAAAACGCTCTATGTTTCAGGCGAAGAGAGCCAGCAACAAATTAAGA
TGCGGGCAGAACGTATCAATCCAAATCCGGCAAATTGCTATATTCTTACCGAGACGAAAACGCAGAATATCTTCAGGCAA
ATTGAAGAGCTTCAGCCGGAAATCGTTATTATTGATTCTATACAAACCCTGCATACAGATTATATCGAGAGCTCCCCGGG
AAGCATATCCCAAATACGGGAATGCACTGCAGAATTAATAAAATATGCCAAGGAAACAGGGGTCCCGGTGATCCTTATTG
GCCATATAACCAAAGAAGGCAGTATTGCCGGGCCAAAGGTCCTGGAGCATATGGTAGATACGGTGCTGCAATTTGAAGGA
GATCGTAATCACGTATATAGAATTTTGCGGGCCCATAAGAATAGATTTGGCTCAACCCATGAATTAGGCATCTATGAGAT
GCAGGGAAGCGGGTTGAGGGAAGTCTCCAACCCATCAGAGATCCTTATTTCTAAAAATGATGAAGGGCTTAGCGGTACCG
CCATAGCAGCTACCCTGGAGGGAATGCGGCCGTTGATGATCGAGATCCAGGCGCTGGTAAGCTCTGCAGTGTACGGCACC
CCACAACGATCTGCTACCGGGTATAATGCCAAGAGGCTTAATATGCTCCTTGCAGTGCTTGAAAAACGAGCAGGCTTTAG
ACTTGGAGCAAAAGATGTATTCCTTAATATTACAGGAGGTATAACCGTAGACGATCCTGCAATAGATCTTGCAGTTATAG
CAGCTATACTTTCATCCAATGAAGATATCACTATTGAAAAAGATATTTGTTTTGCTGCTGAAGTTGGACTTGCCGGTGAA
ATAAGACCAGTGACCCGTGCCGATCAAAGAATATCTGAAGCAGAAAAACTTGGATTTGCCACTATTATGGTCTCAAAACA
AACTAAGCTTCCTGCCACAAATTACACGATCCGTGTCCAAAAAGTAGCAAAAATTGAAGATGTGGTGAGTTATCTTTTCG
GCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-220)

Subunit ChlI of Mg-chelatase (ChlI)

(342-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.259

96.256

0.493
  radA Streptococcus pneumoniae Rx1

48.802

100

0.493
  radA Streptococcus pneumoniae D39

48.802

100

0.493
  radA Streptococcus pneumoniae R6

48.802

100

0.493
  radA Streptococcus pneumoniae TIGR4

48.802

100

0.493
  radA Streptococcus mitis SK321

48.904

100

0.491
  radA Streptococcus mitis NCTC 12261

48.904

100

0.491

Multiple sequence alignment