Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FHI56_RS09950 Genome accession   NZ_CP040804
Coordinates   1919093..1920898 (-) Length   601 a.a.
NCBI ID   WP_013990147.1    Uniprot ID   A0AB37CPF2
Organism   Streptococcus salivarius strain LAB813     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1914093..1925898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS09930 (FHI56_09930) - 1914855..1915340 (-) 486 WP_149561467.1 LURP-one-related/scramblase family protein -
  FHI56_RS09935 (FHI56_09935) - 1915679..1916821 (-) 1143 WP_002886735.1 peptidyl-prolyl cis-trans isomerase -
  FHI56_RS09940 (FHI56_09940) - 1916883..1917590 (-) 708 WP_002886734.1 O-methyltransferase -
  FHI56_RS09945 (FHI56_09945) - 1917662..1918882 (-) 1221 WP_149561468.1 OFA family MFS transporter -
  FHI56_RS09950 (FHI56_09950) pepF 1919093..1920898 (-) 1806 WP_013990147.1 oligoendopeptidase F Regulator
  FHI56_RS09955 (FHI56_09955) - 1920909..1921868 (-) 960 WP_013990146.1 competence protein CoiA -
  FHI56_RS09960 (FHI56_09960) - 1923192..1924182 (+) 991 Protein_1729 IS3 family transposase -
  FHI56_RS09965 (FHI56_09965) - 1924500..1925339 (-) 840 WP_002886729.1 CHAP domain-containing protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69090.09 Da        Isoelectric Point: 4.5615

>NTDB_id=367371 FHI56_RS09950 WP_013990147.1 1919093..1920898(-) (pepF) [Streptococcus salivarius strain LAB813]
MSDNRTHLEEKYTWDLTTIFATDADWETEYESTVQDLKKASAYAGHLLDSAKNLLEATELYMSLMRRLEKIYVYASMKND
QDTTVGLYQEYQAKASNLYSQLSEAFAYFEPEFMTLDDKKLAEFKEQEPGLGLYDHYFERLLANKDHVLSQEAEELLAAA
GDIFNGPTDTFNVLDNADILFPWVSDGQGDVVELTHGNFITLMESKDRDIRKGAYEAMYGTYEQFQHTYAQTLQGVVKVH
NYQAKVRHYNSARHAALAANFIPESVYDSLLESVNKHLPLLHRYLDLRKKVLGLDELKMYDVYTPLSETETALTYEESLK
KAEEVLAIFGEEYSKGVHAAFTERWIDVHPNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRQT
QPYVYGDYSIFLAEIASTTNENILTETLLKEVKDDKTRFAILNHYLDGFKGTVFRQTQFAEFEHAIHEADASGQILTADF
MNKLYADLNEKYYNLKAEDNYEIQFEWERIPHFYMNYYVYQYATGFAAASYLAEKIVHGTEEDKEAYLTYLKAGSSDYPL
EVIKKAGVDMTNTDYLDAAFKVFEDRLVELEALVEKGVHLS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=367371 FHI56_RS09950 WP_013990147.1 1919093..1920898(-) (pepF) [Streptococcus salivarius strain LAB813]
ATGTCAGACAATCGTACTCATTTAGAAGAGAAATACACATGGGATTTGACGACCATTTTTGCGACAGATGCAGATTGGGA
GACTGAATATGAAAGCACTGTTCAGGATTTGAAGAAGGCTAGTGCTTATGCAGGTCATCTTTTGGATTCTGCTAAGAACT
TGCTTGAGGCAACAGAACTTTATATGAGCCTTATGCGTCGCTTGGAGAAAATCTATGTGTATGCGTCAATGAAAAATGAC
CAAGACACAACAGTAGGGCTTTACCAAGAGTACCAAGCTAAGGCCTCAAACCTTTACTCACAGTTGAGTGAAGCCTTTGC
TTACTTTGAGCCTGAATTTATGACCTTGGATGATAAGAAATTAGCTGAGTTTAAAGAACAAGAGCCAGGTCTTGGACTTT
ATGACCACTATTTCGAACGCCTTTTGGCAAACAAGGACCACGTTCTTTCCCAAGAAGCTGAAGAGCTCTTGGCAGCAGCC
GGTGATATTTTCAACGGTCCAACGGACACCTTCAATGTCTTGGATAATGCTGATATCCTCTTCCCATGGGTATCAGATGG
TCAAGGGGATGTGGTTGAGTTGACACATGGTAACTTTATCACTCTCATGGAATCTAAGGACCGTGACATTCGTAAGGGAG
CTTATGAAGCGATGTATGGGACTTATGAGCAGTTCCAACATACTTATGCACAAACACTCCAAGGCGTTGTCAAGGTTCAC
AATTACCAAGCCAAAGTTCGTCACTATAATTCAGCACGTCATGCAGCACTTGCGGCTAACTTTATTCCAGAGAGTGTTTA
TGACTCACTCTTGGAATCAGTGAACAAGCATTTGCCACTTTTACACCGTTACCTAGATTTGCGTAAGAAGGTCTTGGGAC
TTGATGAGCTTAAGATGTATGACGTCTATACACCACTTTCTGAGACTGAAACTGCTCTTACTTATGAAGAATCTCTCAAG
AAAGCAGAAGAAGTCTTGGCAATCTTTGGTGAAGAGTATAGTAAAGGGGTTCATGCAGCCTTTACGGAACGTTGGATTGA
CGTTCACCCTAACAAAGGAAAACGTTCAGGTGCATACTCAGGTGGTGCCTACGATACCAATGCTTTCATGCTTTTGAACT
GGCAAGACACTTTGGATAATCTCTTTACCTTGGTTCACGAGACTGGTCACAGTTTGCATTCAACTTTCACACGTCAGACT
CAACCATATGTTTACGGAGATTACTCAATCTTCTTGGCAGAAATTGCGTCTACAACCAATGAAAATATCTTGACAGAAAC
GCTTCTTAAAGAAGTTAAAGATGACAAGACACGCTTTGCTATCCTTAACCACTATTTGGATGGCTTCAAGGGAACTGTCT
TCCGTCAAACCCAATTTGCTGAGTTTGAACATGCTATCCATGAAGCGGATGCATCCGGTCAGATTTTGACAGCAGACTTC
ATGAATAAGCTTTACGCAGACCTCAATGAGAAATACTATAACCTCAAAGCTGAGGATAACTACGAAATTCAGTTTGAGTG
GGAACGTATTCCGCATTTCTACATGAATTACTATGTCTACCAATACGCTACAGGATTTGCTGCGGCAAGCTACTTGGCTG
AAAAAATTGTTCACGGTACTGAAGAAGATAAAGAAGCTTACCTTACTTACCTTAAGGCAGGAAGCTCAGACTATCCTTTG
GAAGTCATCAAGAAAGCTGGTGTTGATATGACCAATACCGACTACTTAGATGCTGCCTTCAAAGTTTTTGAAGACCGTCT
TGTTGAATTGGAAGCCTTGGTTGAAAAAGGTGTGCACCTTTCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

99.501

100

0.995

Multiple sequence alignment