Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SLIT_RS06630 Genome accession   NC_013959
Coordinates   1326127..1327488 (+) Length   453 a.a.
NCBI ID   WP_013029466.1    Uniprot ID   D5CRI2
Organism   Sideroxydans lithotrophicus ES-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1321127..1332488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLIT_RS15170 (Slit_1328) - 1322505..1324163 (+) 1659 WP_013029463.1 ATP-binding protein -
  SLIT_RS06620 (Slit_1329) - 1324156..1324611 (+) 456 WP_013029464.1 response regulator -
  SLIT_RS06625 (Slit_1330) - 1324629..1326023 (+) 1395 WP_013029465.1 HD domain-containing phosphohydrolase -
  SLIT_RS06630 (Slit_1331) radA 1326127..1327488 (+) 1362 WP_013029466.1 DNA repair protein RadA Machinery gene
  SLIT_RS06635 (Slit_1332) - 1327554..1328507 (+) 954 WP_013029467.1 cation diffusion facilitator family transporter -
  SLIT_RS06640 (Slit_1333) - 1328685..1329326 (+) 642 WP_263053161.1 DUF599 domain-containing protein -
  SLIT_RS06645 (Slit_1334) - 1329782..1329973 (-) 192 WP_013029469.1 hypothetical protein -
  SLIT_RS06650 (Slit_1335) - 1330319..1331080 (+) 762 WP_013029470.1 membrane protein -
  SLIT_RS06655 (Slit_1336) - 1331128..1331814 (+) 687 WP_013029471.1 haloacid dehalogenase type II -
  SLIT_RS06660 (Slit_1337) - 1331847..1332107 (+) 261 WP_013029472.1 DUF5062 family protein -
  SLIT_RS06665 (Slit_1338) - 1332167..1332472 (-) 306 WP_013029473.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48450.85 Da        Isoelectric Point: 7.0809

>NTDB_id=36737 SLIT_RS06630 WP_013029466.1 1326127..1327488(+) (radA) [Sideroxydans lithotrophicus ES-1]
MAKAKTIYSCTECGGQSPKWQGQCPNCGEWNTLVESVAEASAPAGKNRYSALAASGKLQQLAEVEASEVSRTPTGIAEFD
RVLGGGLVEGGVVLIGGDPGIGKSTLLLQALAHLSTTKKVLYVSGEESAQQIALRAKRLSLDAREVHLLPEIQLEKIQAT
VAHEKPDVVVIDSIQTVYSEQLTSAPGSVAQVRECAAQLTRIAKSAGVTMILVGHVTKEGALAGPRVLEHIVDTVLYFEG
DTHSSFRLIRAFKNRFGAVNELGVFAMTEKGLREVSNPSALFLSQHGTQVPGSCVMVTQEGSRPLLVEIQALLDEAHSPS
PRRLSLGLEQNRLAMLLAVLHRHAGIACFDQDVFINAVGGVKITEPGADLAVLLAIVSSLRNRPLPEKMVVFGEVGLAGE
VRPVQRGQERLKEAAKLGFTHAIIPKANAPKHKIDDMEIIAVERVDEAVAKMR

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=36737 SLIT_RS06630 WP_013029466.1 1326127..1327488(+) (radA) [Sideroxydans lithotrophicus ES-1]
ATGGCAAAGGCAAAAACGATCTATAGCTGCACCGAATGCGGCGGGCAATCGCCAAAATGGCAAGGCCAATGCCCGAACTG
CGGCGAATGGAACACGCTGGTGGAGTCGGTTGCGGAAGCATCTGCGCCTGCCGGCAAGAATCGCTATAGCGCATTGGCTG
CATCCGGAAAATTGCAGCAGCTGGCCGAAGTGGAGGCGAGCGAGGTGTCGCGCACGCCGACCGGGATCGCCGAATTCGAC
CGCGTACTGGGCGGCGGGCTGGTCGAAGGTGGGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAATCCACCCTGTT
GCTGCAGGCACTAGCACATCTCTCCACGACGAAGAAAGTCCTCTACGTCAGCGGCGAAGAGTCCGCGCAGCAGATCGCGC
TGCGGGCCAAGCGGCTTTCGCTGGACGCACGCGAAGTCCATCTGCTGCCGGAGATACAGCTGGAGAAGATCCAGGCAACC
GTTGCGCATGAAAAGCCGGATGTAGTGGTCATCGATTCCATCCAGACCGTGTATTCCGAACAGTTGACCAGTGCACCTGG
CTCGGTGGCGCAGGTGCGCGAATGTGCGGCGCAACTCACCCGTATCGCAAAGAGCGCTGGGGTGACCATGATCCTCGTCG
GCCATGTCACCAAGGAGGGTGCTCTGGCCGGGCCGCGCGTGCTGGAGCACATCGTCGATACCGTGCTGTATTTCGAGGGC
GACACGCATTCCAGTTTCCGCCTCATCCGCGCGTTCAAGAACCGCTTCGGTGCGGTGAACGAGCTGGGTGTATTTGCCAT
GACCGAAAAGGGGCTGCGCGAAGTGAGCAACCCGTCCGCATTGTTCCTGTCGCAGCATGGTACGCAGGTGCCGGGTTCCT
GCGTGATGGTCACCCAGGAAGGCTCGCGGCCATTGCTGGTGGAGATACAGGCGCTGCTCGACGAGGCGCATTCGCCCAGT
CCGCGCCGCCTGTCTCTCGGTCTGGAACAGAACCGTCTGGCCATGCTGCTGGCAGTGCTGCATCGCCACGCGGGCATCGC
CTGTTTCGACCAGGATGTGTTCATCAATGCCGTGGGCGGGGTGAAGATCACCGAACCGGGTGCCGATCTCGCCGTCCTGC
TCGCGATCGTTTCATCGCTGCGCAACAGGCCGCTGCCGGAAAAGATGGTGGTGTTCGGCGAAGTGGGGCTGGCAGGCGAG
GTGCGACCCGTGCAGCGCGGGCAGGAGCGCCTGAAAGAAGCCGCCAAGCTCGGCTTCACCCATGCCATCATCCCCAAAGC
CAACGCGCCCAAACACAAGATCGACGACATGGAGATCATCGCTGTGGAGCGGGTGGATGAAGCAGTAGCGAAGATGCGCT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-220)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(359-450)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D5CRI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.989

100

0.512
  radA Streptococcus mitis SK321

49.011

100

0.492
  radA Streptococcus mitis NCTC 12261

48.035

100

0.486
  radA Streptococcus pneumoniae TIGR4

48.238

100

0.483
  radA Streptococcus pneumoniae R6

48.238

100

0.483
  radA Streptococcus pneumoniae Rx1

48.238

100

0.483
  radA Streptococcus pneumoniae D39

48.238

100

0.483

Multiple sequence alignment