Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   KPZ59_RS16050 Genome accession   NZ_CP048131
Coordinates   3381277..3381639 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain D46     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3376277..3386639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPZ59_RS16040 (KPZ59_03219) - 3378555..3380633 (-) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -
  KPZ59_RS16045 (KPZ59_03220) - 3380680..3381216 (-) 537 WP_000729762.1 chemotaxis protein CheW -
  KPZ59_RS16050 (KPZ59_03221) pilH 3381277..3381639 (-) 363 WP_000101096.1 response regulator Machinery gene
  KPZ59_RS16055 (KPZ59_03222) pilG 3381663..3382046 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  KPZ59_RS16060 (KPZ59_03223) - 3382329..3382967 (+) 639 WP_002027721.1 hypothetical protein -
  KPZ59_RS16065 (KPZ59_03224) - 3383027..3384145 (+) 1119 WP_111906116.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=367351 KPZ59_RS16050 WP_000101096.1 3381277..3381639(-) (pilH) [Acinetobacter baumannii strain D46]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=367351 KPZ59_RS16050 WP_000101096.1 3381277..3381639(-) (pilH) [Acinetobacter baumannii strain D46]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392

Multiple sequence alignment