Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   FHI56_RS05850 Genome accession   NZ_CP040804
Coordinates   934329..934631 (+) Length   100 a.a.
NCBI ID   WP_014633320.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LAB813     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 929329..939631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS05820 (FHI56_05820) - 929628..930017 (-) 390 WP_045769008.1 hypothetical protein -
  FHI56_RS05825 (FHI56_05825) - 930169..931011 (+) 843 WP_045768903.1 Cof-type HAD-IIB family hydrolase -
  FHI56_RS05830 (FHI56_05830) - 931048..931674 (-) 627 WP_045768902.1 Pr6Pr family membrane protein -
  FHI56_RS05835 (FHI56_05835) - 931784..932941 (+) 1158 WP_149561516.1 Mbeg1-like protein -
  FHI56_RS05840 (FHI56_05840) - 932973..933737 (+) 765 WP_149561256.1 SDR family NAD(P)-dependent oxidoreductase -
  FHI56_RS05845 (FHI56_05845) - 933974..934327 (+) 354 WP_045001823.1 type II toxin-antitoxin system RelE/ParE family toxin -
  FHI56_RS05850 (FHI56_05850) HI0659 934329..934631 (+) 303 WP_014633320.1 helix-turn-helix domain-containing protein Machinery gene
  FHI56_RS05855 (FHI56_05855) - 934795..937785 (+) 2991 WP_149561257.1 type I restriction endonuclease subunit R -
  FHI56_RS05860 (FHI56_05860) - 937807..938952 (+) 1146 WP_149561258.1 AbiH family protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10965.90 Da        Isoelectric Point: 10.0976

>NTDB_id=367351 FHI56_RS05850 WP_014633320.1 934329..934631(+) (HI0659) [Streptococcus salivarius strain LAB813]
MAREKNPAIGSSWDDLQKTIFTKEEIAASELRVALMLEIIDARKKQGISQKKLEELSGVKQPVIARMETGKTAPQLDTVL
KILASLGKTLAVVPLDSHVK

Nucleotide


Download         Length: 303 bp        

>NTDB_id=367351 FHI56_RS05850 WP_014633320.1 934329..934631(+) (HI0659) [Streptococcus salivarius strain LAB813]
ATGGCTCGAGAAAAGAATCCAGCAATTGGAAGTAGTTGGGATGATTTACAGAAAACTATTTTCACTAAAGAGGAAATCGC
GGCAAGTGAACTCCGTGTCGCACTGATGCTTGAGATTATTGATGCTCGTAAAAAACAAGGCATTTCTCAAAAGAAACTTG
AAGAGCTAAGTGGTGTCAAACAACCTGTTATCGCACGTATGGAGACAGGTAAAACAGCACCTCAGTTAGATACGGTTCTT
AAAATACTGGCGAGTCTAGGTAAGACATTGGCGGTAGTCCCACTTGATTCACATGTGAAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.92

87

0.53

Multiple sequence alignment