Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   FHI56_RS02450 Genome accession   NZ_CP040804
Coordinates   254319..255029 (-) Length   236 a.a.
NCBI ID   WP_013991284.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LAB813     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 249319..260029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS02420 (FHI56_02420) - 250403..251422 (-) 1020 WP_171021848.1 IS30-like element IS1139 family transposase -
  FHI56_RS02430 (FHI56_02430) - 251914..252795 (+) 882 WP_002887043.1 class II fructose-bisphosphate aldolase -
  FHI56_RS02435 (FHI56_02435) - 252961..253317 (+) 357 WP_049527740.1 hypothetical protein -
  FHI56_RS02440 (FHI56_02440) - 253350..253688 (+) 339 WP_013991282.1 hypothetical protein -
  FHI56_RS02445 (FHI56_02445) - 253705..254265 (+) 561 WP_041817289.1 TIGR01440 family protein -
  FHI56_RS02450 (FHI56_02450) treR 254319..255029 (-) 711 WP_013991284.1 trehalose operon repressor Regulator
  FHI56_RS02455 (FHI56_02455) treP 255216..257165 (+) 1950 WP_262407721.1 PTS system trehalose-specific EIIBC component -
  FHI56_RS02460 (FHI56_02460) treC 257220..258845 (+) 1626 WP_014632531.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27341.92 Da        Isoelectric Point: 6.6088

>NTDB_id=367327 FHI56_RS02450 WP_013991284.1 254319..255029(-) (treR) [Streptococcus salivarius strain LAB813]
MKKYQIIYKDLEKAIHEQKYQVGDFLPTEQELVQSYQVSRDTIRKALTLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIEQQGLNSQTNVISLDKIIVDSNLSERTGFSNSRQVWRVVRQRVVDSCASVIDIDYLDASLVPQLNRSIAEYSIY
DYIENQLNLSISHAFKEITIDNATDQDKILIDLGKDQHVVCVRSKVYLNNGKQFQFTESRHKLEKFKFVDYAKRHH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=367327 FHI56_RS02450 WP_013991284.1 254319..255029(-) (treR) [Streptococcus salivarius strain LAB813]
ATGAAAAAATATCAGATTATTTATAAGGATTTAGAAAAAGCTATCCATGAGCAAAAGTATCAAGTGGGAGACTTTCTCCC
CACCGAGCAAGAACTGGTTCAATCTTACCAGGTTAGTAGAGATACTATACGAAAGGCATTAACCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAAATTCATGGCTCTGGTTCTCAGGTTATTAACCAGGAACAAATCAACTTTCCTGTGTCTGACCTTACT
AGTTACCAGGAGCTAATCGAGCAACAAGGCCTTAATTCGCAAACCAACGTTATTTCTCTGGATAAAATCATTGTTGATTC
AAATCTCTCAGAAAGAACTGGTTTTTCTAATAGCCGACAGGTTTGGCGTGTTGTTCGTCAAAGAGTCGTTGATAGCTGTG
CCTCTGTTATAGATATTGATTACCTAGACGCCAGCCTTGTTCCGCAACTAAACCGTAGCATTGCTGAATACTCTATTTAC
GACTACATTGAGAATCAACTCAACCTTAGCATTTCCCACGCCTTTAAAGAAATCACTATCGATAACGCTACCGATCAAGA
TAAGATTCTTATCGACCTAGGTAAGGACCAGCACGTTGTCTGTGTCCGTTCAAAAGTTTATTTAAACAATGGAAAACAGT
TCCAATTTACGGAAAGTCGCCACAAACTTGAAAAATTCAAATTTGTTGATTATGCCAAGCGTCATCATTGA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(88-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.426

99.576

0.602

Multiple sequence alignment