Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   SAOV_RS05530 Genome accession   NC_017337
Coordinates   1110584..1111294 (-) Length   236 a.a.
NCBI ID   WP_000094091.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus ED133     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1105584..1116294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAOV_RS05490 (SAOV_1067c) - 1105737..1106876 (-) 1140 WP_000843605.1 nucleotidyltransferase -
  SAOV_RS05495 (SAOV_1068) - 1107003..1107560 (+) 558 WP_000872155.1 YceD family protein -
  SAOV_RS05505 (SAOV_1069) rpmF 1107640..1107813 (+) 174 WP_000290472.1 50S ribosomal protein L32 -
  SAOV_RS05510 (SAOV_1070c) - 1107930..1109315 (-) 1386 WP_000861307.1 recombinase family protein -
  SAOV_RS05515 (SAOV_1071c) - 1109368..1109703 (-) 336 WP_001292496.1 hypothetical protein -
  SAOV_RS05520 (SAOV_1072c) - 1109705..1110208 (-) 504 WP_000428010.1 hypothetical protein -
  SAOV_RS05525 (SAOV_1073c) - 1110244..1110429 (-) 186 WP_000100503.1 hypothetical protein -
  SAOV_RS05530 (SAOV_1074c) irvR 1110584..1111294 (-) 711 WP_000094091.1 helix-turn-helix domain-containing protein Regulator
  SAOV_RS05535 (SAOV_1075) - 1111466..1111705 (+) 240 WP_000548577.1 helix-turn-helix transcriptional regulator -
  SAOV_RS05540 (SAOV_1076) - 1111718..1112161 (+) 444 WP_000435360.1 hypothetical protein -
  SAOV_RS05545 - 1112176..1112316 (+) 141 WP_000939495.1 hypothetical protein -
  SAOV_RS05550 - 1112309..1112518 (-) 210 WP_000772137.1 hypothetical protein -
  SAOV_RS05555 (SAOV_1077) - 1112575..1113288 (+) 714 WP_001157024.1 phage repressor protein -
  SAOV_RS05560 - 1113452..1113682 (-) 231 WP_000395456.1 hypothetical protein -
  SAOV_RS05565 - 1113754..1113975 (+) 222 WP_000594788.1 hypothetical protein -
  SAOV_RS05570 (SAOV_1078) - 1113968..1114135 (+) 168 WP_000048122.1 DUF1270 domain-containing protein -
  SAOV_RS05575 - 1114136..1114456 (+) 321 WP_000219663.1 hypothetical protein -
  SAOV_RS05580 (SAOV_1079) - 1114548..1114808 (+) 261 WP_000291083.1 DUF1108 family protein -
  SAOV_RS05585 (SAOV_1080) - 1114818..1115039 (+) 222 WP_001077279.1 DUF2483 family protein -
  SAOV_RS05590 - 1115032..1115655 (+) 624 WP_000139724.1 DUF1071 domain-containing protein -
  SAOV_RS05595 (SAOV_1081) ssb 1115655..1116080 (+) 426 WP_000934776.1 single-stranded DNA-binding protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26884.44 Da        Isoelectric Point: 5.1973

>NTDB_id=36729 SAOV_RS05530 WP_000094091.1 1110584..1111294(-) (irvR) [Staphylococcus aureus subsp. aureus ED133]
MSSFSSNLERLMNKRDMSDSELAELVDVNRTTVTRWRKGIRSPKLDKLPEIANVFGVKPLDLIHDMDDSKIIEEIHNVSS
QLTPPRQSNVLKYATNQLEEQNNDSDDNLVDFNSYIQEKSEVDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVN
GDSMEPLFKNGQIIFIEKSHTIKDGQIGVFIINGDAYVKKVYVEDNRLTLVSLNKKYKDLHFYDNESVRLVGKVIL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=36729 SAOV_RS05530 WP_000094091.1 1110584..1111294(-) (irvR) [Staphylococcus aureus subsp. aureus ED133]
ATGAGTTCATTTTCTTCGAATCTAGAACGTCTGATGAACAAAAGAGATATGAGTGATAGTGAATTAGCAGAATTAGTAGA
TGTAAATAGAACAACAGTCACAAGATGGAGAAAGGGAATTAGAAGTCCAAAACTAGATAAATTACCTGAAATAGCTAACG
TTTTTGGAGTTAAACCCTTAGATTTAATACATGATATGGATGATTCGAAAATTATTGAAGAAATTCATAACGTGTCATCT
CAACTCACGCCTCCAAGACAAAGCAATGTACTAAAATATGCGACTAATCAATTAGAAGAGCAAAATAATGACAGTGATGA
TAATCTGGTAGATTTCAATTCTTACATTCAAGAAAAATCCGAAGTGGATATATATGGTTGTGCGTCTGCTGGTATTGGTG
AAAGATTATATAACGAACCTATTTCAAAAGAATTCGTAAGAGGTTATGTCCCCGCACATGATATAGCTTTAAAAGTAAAT
GGAGACTCAATGGAGCCGTTATTTAAAAATGGACAAATTATATTCATTGAAAAATCTCACACTATCAAAGATGGACAAAT
AGGCGTCTTTATTATAAATGGAGATGCTTACGTAAAGAAGGTTTATGTAGAAGATAACAGATTAACGTTGGTTTCTTTAA
ATAAAAAGTATAAAGATTTACATTTTTATGATAATGAAAGTGTGAGATTAGTTGGAAAAGTTATTTTATAG

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(124-235)

Helix-turn-helix (HTH_3)

(8-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

30.769

100

0.373

Multiple sequence alignment