Detailed information NTG0367268

Bioinformatically predicted

Overview

• Name: clpE
• Type: Regulator
• Locus tag: GSF71_RS06260
• Genome accession: NZ_CP048116
• Coordinates: 1266888..1269011 (+)
• Length: 707 a.a.
• NCBI ID: WP_016264495.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain MBEL1397
• Function: repress competence development (at the early growth phase) (predicted from homology) Competence regulation

Genomic Context

Location: 1261888..1274011

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GSF71_RS06240	-	1262183..1262533 (-)	351	WP_157108067.1	ArsR/SmtB family transcription factor	-
GSF71_RS06245	-	1262601..1263209 (+)	609	WP_076645427.1	CadD family cadmium resistance transporter	-
GSF71_RS06250	-	1263427..1263912 (-)	486	WP_076645429.1	TetR/AcrR family transcriptional regulator	-
GSF71_RS06255	-	1264019..1266607 (+)	2589	WP_085391606.1	efflux RND transporter permease subunit	-
GSF71_RS06260	clpE	1266888..1269011 (+)	2124	WP_016264495.1	AAA family ATPase	Regulator
GSF71_RS06265	-	1269170..1269583 (+)	414	WP_231953265.1	DUF308 domain-containing protein	-
GSF71_RS06270	-	1269640..1270257 (-)	618	WP_025016106.1	DUF1361 domain-containing protein	-
GSF71_RS06275	-	1270454..1271446 (+)	993	WP_025016105.1	choloylglycine hydrolase family protein	-
GSF71_RS06280	-	1271571..1272491 (-)	921	WP_011373852.1	IS30-like element ISLsa1 family transposase	-
GSF71_RS06285	-	1272547..1273842 (+)	1296	WP_162100916.1	helix-turn-helix domain-containing protein	-

Sequence

Protein

• Length: 707 a.a.
• Molecular weight: 78445.88 Da
• Isoelectric Point: 4.7412

>NTDB_id=367268 GSF71_RS06260 WP_016264495.1 1266888..1269011(+) (clpE) [Latilactobacillus sakei strain MBEL1397]
MANMYGNDPFFNNDMDDIFNQVFRRMGNSESARYVINGRELSPDEFAQYRATGKLPNREKEIEIKQNGEHALKKGGILEK
LGRNLTQEARDGLLDPVIGRYNEIQETAEILSRRTKNNPILVGDAGVGKTAVVEGLAQEIVAGKVPETIKDKEIYSIDLS
SLEAGTQYRGSFEENIKNLIKEVKAAGNVILFFDEIHQILGIGSTGGEDGGKGLADIIKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNDVLVNEPSAADTVKILQGIKGLYEKHHHIELPDDVLKAAVDYSVQYIPQRTLPDKAIDLLDMTAAHL
AAKRPETDKAKLAAELKQLEADKAEAVEAENYQAAEDLKVRIEKIKTQLENNDQHAAVMIATVDDIAQSVERLTGIPVAK
MGSNDIQRLKNLGQRLKDKVIGQDEAVEMVARAIRRNRAGFSEGNQPIGSFLFVGPTGVGKTELAKQLALDMFGNKEAII
RLDMSEYADRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIVLFDEIEKADPQVLTLLLQVMDDGRLTDGQGNVIDF
KNTVIIATSNAGFGNEKLTMNDQEDAKLLDKLAPYFRPEFLNRFNGIVEFTHLTKADLSQIVDLMLTNVEQTLAKKELTL
VVSKEAKDWLMEEGYDEAMGARPLRRVIEQQIRDKVTDFYLDHADVKDLKADLVDDQIVIQAVDSEN

Nucleotide

• Length: 2124 bp

>NTDB_id=367268 GSF71_RS06260 WP_016264495.1 1266888..1269011(+) (clpE) [Latilactobacillus sakei strain MBEL1397]
ATGGCAAATATGTACGGAAATGACCCATTTTTTAATAATGATATGGATGATATCTTCAATCAAGTTTTTAGAAGAATGGG
GAATTCAGAGTCAGCGCGATATGTGATTAACGGACGAGAATTATCACCGGATGAGTTTGCTCAGTATCGGGCAACTGGTA
AATTACCTAATCGAGAAAAAGAAATTGAAATTAAGCAAAATGGTGAACATGCTCTTAAAAAAGGTGGCATTCTTGAAAAA
TTAGGTCGAAACTTAACCCAGGAAGCACGGGATGGTTTATTAGATCCTGTCATTGGCCGGTATAATGAAATCCAAGAAAC
AGCCGAAATATTAAGTCGCCGGACTAAAAATAATCCAATTCTAGTTGGTGATGCAGGTGTTGGGAAGACCGCGGTGGTTG
AAGGATTAGCACAAGAAATTGTGGCTGGAAAAGTGCCTGAAACCATTAAAGATAAAGAAATCTACTCAATCGATTTGTCA
TCACTAGAAGCCGGGACACAATATCGGGGCTCGTTTGAAGAAAATATTAAAAATTTAATTAAAGAAGTAAAAGCAGCCGG
GAACGTCATTCTCTTTTTCGATGAAATTCATCAGATTTTAGGGATAGGTTCAACCGGTGGCGAAGATGGCGGCAAAGGGT
TAGCTGATATTATCAAGCCAGCTTTATCACGTGGTGAATTGACGGTCATCGGTGCGACAACGCAAGATGAATATCGCAAT
ACTATTTTGAAAAATGCCGCGTTAGCAAGACGGTTCAACGATGTGCTGGTGAATGAACCTAGCGCAGCAGATACGGTTAA
AATCTTGCAAGGGATTAAAGGTTTGTACGAAAAACACCATCACATTGAACTACCAGATGATGTTTTGAAAGCGGCTGTTG
ACTATTCTGTTCAATATATTCCACAACGGACGTTGCCAGATAAGGCAATCGATTTATTAGATATGACCGCCGCTCATTTA
GCAGCTAAACGGCCAGAAACAGATAAAGCTAAATTGGCAGCTGAACTTAAACAGTTAGAAGCGGATAAAGCCGAAGCTGT
CGAGGCGGAGAATTATCAAGCTGCTGAAGATTTAAAAGTAAGGATTGAGAAGATTAAGACGCAATTAGAAAATAATGATC
AGCATGCGGCTGTAATGATTGCGACTGTTGATGATATTGCGCAATCTGTTGAAAGATTAACTGGGATTCCCGTTGCTAAA
ATGGGGAGCAATGATATTCAACGCTTGAAGAACTTAGGTCAACGGTTAAAAGATAAGGTCATTGGTCAAGATGAAGCTGT
TGAAATGGTAGCACGCGCAATTCGCAGAAATCGGGCAGGTTTTTCTGAAGGCAACCAACCAATTGGCAGTTTCTTATTTG
TTGGTCCAACTGGGGTTGGGAAAACTGAATTAGCAAAACAATTAGCCTTAGATATGTTTGGTAACAAAGAAGCGATTATC
CGTTTGGATATGAGTGAATATGCTGACCGGACAGCCGTTTCTAAATTGATAGGGACGACAGCCGGTTATGTTGGCTATGA
CGATAATTCCAATACATTAACCGAACGCGTTCGTCGTAACCCATATTCAATTGTCTTGTTTGATGAAATTGAAAAAGCTG
ATCCACAAGTTTTAACATTATTACTACAAGTGATGGACGATGGTCGCTTAACGGATGGTCAAGGGAACGTGATCGACTTT
AAGAACACGGTGATTATCGCGACATCTAATGCCGGTTTTGGTAATGAAAAATTAACCATGAACGACCAAGAAGATGCTAA
GTTATTAGATAAGTTAGCACCATACTTCAGACCAGAATTCTTAAACCGGTTTAACGGGATTGTTGAATTTACGCATTTAA
CGAAAGCTGACTTGTCACAAATTGTGGATTTAATGTTAACCAACGTTGAACAAACATTAGCTAAAAAAGAATTAACCTTA
GTTGTTTCAAAAGAAGCTAAGGATTGGTTGATGGAAGAAGGCTACGATGAGGCAATGGGGGCTCGTCCATTAAGACGGGT
TATTGAACAACAAATCAGAGATAAGGTCACTGATTTTTACCTCGATCATGCAGATGTCAAAGACTTAAAGGCAGATTTAG
TTGATGATCAGATTGTCATTCAAGCGGTCGACTCTGAAAACTAA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (120-252)

• AAA lid domain (AAA_lid_9) (262-359)

• AAA domain (Cdc48 subfamily) (AAA_2) (446-605)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (613-683)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpE	Streptococcus mutans UA159	49.214	89.958	0.443
clpC	Lactococcus lactis subsp. cremoris KW2	48.889	89.109	0.436
clpE	Streptococcus pneumoniae Rx1	47.504	87.836	0.417
clpE	Streptococcus pneumoniae D39	47.504	87.836	0.417
clpE	Streptococcus pneumoniae R6	47.504	87.836	0.417
clpE	Streptococcus pneumoniae TIGR4	47.343	87.836	0.416
clpC	Streptococcus pneumoniae Rx1	43.862	94.484	0.414
clpC	Streptococcus pneumoniae D39	43.862	94.484	0.414
clpC	Streptococcus pneumoniae TIGR4	44.154	91.938	0.406
clpC	Bacillus subtilis subsp. subtilis str. 168	45.032	88.26	0.397
clpC	Streptococcus thermophilus LMD-9	44.75	87.553	0.392
clpC	Streptococcus thermophilus LMG 18311	44.013	87.412	0.385
clpC	Streptococcus mutans UA159	43.851	87.412	0.383
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.64	87.977	0.366